Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017549.1 Corchorus olitorius cultivar O-4 contig17582, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103669

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
445--482
2
19.0
2
100
0
76
50
0
0
50
1.00
5443--5467
12
2.1
12
100
0
50
32
28
24
16
1.96
6950--6976
1
27.0
1
100
0
54
100
0
0
0
0.00
11284--11308
2
12.5
2
100
0
50
52
0
48
0
1.00
14358--14429
36
2.0
36
97
0
135
41
9
16
31
1.81
17354--17440
42
2.0
43
93
2
149
47
19
6
26
1.75
17797--17831
11
3.2
11
83
0
52
77
17
5
0
0.96
18624--18680
30
1.9
30
89
3
89
21
31
12
35
1.90
34280--34318
6
6.5
6
93
0
60
15
20
64
0
1.30
61114--61168
28
2.0
28
89
7
85
49
0
3
47
1.19
61114--61154
14
2.9
15
75
14
50
43
0
2
53
1.13
61291--61349
19
3.0
19
83
9
82
35
8
22
33
1.84
67147--67171
12
2.1
12
100
0
50
16
8
16
60
1.58
100765--100794
2
15.0
2
92
0
51
50
46
0
3
1.18
100794--100824
2
15.5
2
93
0
53
48
3
0
48
1.17
103638--103668
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!