Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017558.1 Corchorus olitorius cultivar O-4 contig17591, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8301
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27


Found at i:4906 original size:23 final size:23

Alignment explanation


    Indices: 4879--4922  Score: 88
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       4869 AAATGTATTC

                                   
       4879 ATCACTCTGCAAAGCAAGAAGCT
          1 ATCACTCTGCAAAGCAAGAAGCT

                                 
       4902 ATCACTCTGCAAAGCAAGAAG
          1 ATCACTCTGCAAAGCAAGAAG

       4923 TGGTAAGCAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   21  1.00

ACGTcount: A:0.41, C:0.25, G:0.18, T:0.16


Consensus pattern (23 bp):   
ATCACTCTGCAAAGCAAGAAGCT
Done.