Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017564.1 Corchorus olitorius cultivar O-4 contig17597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102323
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:600 original size:332 final size:331
Alignment explanation
Indices: 1--3513 Score: 4141
Period size: 332 Copynumber: 10.7 Consensus size: 331
*
1 TTTTTACGAGCATCTGAGTCTTGTTTCGATTAAATTAGAAATTAATTCAG-----AAAA-AAAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAGAAAAA
* * * **
60 CGATATTAGAAGCGTGAAAAGCCCTCCAATATTTTTTGCGTTAAATTATATAA--TTTTATGTTT
66 CGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATA-AATTTTTTATGAGT
* *
123 ATTCTGGGAAACAATTGAGGGAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
130 ATT-TGGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* * *
188 GTACTAACCATCACGGTTTTAGGCTAAATACGAGATCTGGCGGCCCGA-TGAAGTTTTGCATGAT
194 GTACTAACCATCACGGTTTTAGGCTAAAAACGCGTTCTGGCGGCCCGACT-AAGTTTTGCATGAT
* *
252 TTTTGGCGCCATGACTCCTTGAAATATCTATTTTGATCTGACCAAATCTCAGCAACGATGGATTT
258 TTTTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAGCAACGATGGATTT
317 AAGGATTTG
323 AAGGATTTG
*
326 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTATAAATTAATTCAGAAAAAAAAAAGGAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAG-AAAAAAAAA-GAAA
* * *
391 AACGATATTAGAAGCGTGAAAA-CCCTCCAATATTTTTGGCGTAGAATTATAAATTTTTTAGGAG
64 AACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAAATTTTTTATGAG
* * *
455 TATTTGGGAAAAATTTGAGGTAAAATCTGTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
129 TATTTGGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* *
520 GTACTAACCATCACGGTTTTAAGCTAAAAACGCGTTCTGGCGGCCTGACTAAGTTTTGCATGATT
194 GTACTAACCATCACGGTTTTAGGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGATT
* * * *
585 TTTGGCTCCATGACTCCTTGAAATATCTATTTTCATCTAACAAAATCTCAGCAACGATGGATTTA
259 TTTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAGCAACGATGGATTTA
*
650 AAGATTTG
324 AGGATTTG
* * * *
658 TTTTTACAAGCATCTGAATCTTGTTTCAATTAAATTACAAATTAATTCAGAAAAAAAAACAAAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAGAAAAA
* * *
723 CGAAATTAGAAGCGTGAAAAGCCCTCCGATCTTTTT-G-GTTGAATTA-AATATTTTATATGAGT
66 CGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAA-ATTTTTTATGAGT
* * * * **
785 ATTATAGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTCCAAAATATTAGTCGTTATCGT
130 ATT-TGGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* * * *
850 GTACTAACCATCACGG-TTTATGGCTAATAACGCGATT-TGGGGGCTCGACTCAGTTTTGCATGA
194 GTACTAACCATCACGGTTTTA-GGCTAAAAACGCG-TTCTGGCGGCCCGACTAAGTTTTGCATGA
* * * * **
913 TTTTTGGCGCCAAGATTCCTTGAGATATCCATATTT-ATCTAACCAAATCTCTCCAACGATGGAT
257 TTTTTGGCGCCAAGACTCCTTGAAATATCTAT-TTTCATCTGACCAAATCTCAGCAACGATGGAT
977 TTAAGGATTTG
321 TTAAGGATTTG
988 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAGGAAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAA-GAAAA
* * *
1053 ACGATATTAGAAGCGTGAAAAACCCTCCAATATTTTTGGCGTTGAATTATAAATTTTTTAGGAGT
65 ACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAAATTTTTTATGAGT
* *
1118 ATTTGGGAAAAAATTGAGGTAAAATCTTTCGGGTCAATTTTTGCAAAGTTTTTAGCCGAAATCGT
130 ATTTGGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAA-ATTTTAGCCGAAATCGT
* * * *
1183 GTACTAACTATCACGGTTTTAGGCTAAAAACGTGTTCTAGTGGCCCGACTAAGTTTTGCATGATT
194 GTACTAACCATCACGGTTTTAGGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGATT
* *
1248 TTTGGCGCCAAGACTCCTTGAAATATCTATTCTCATCTGACCAAATCTCAACAACGATGGATTTA
259 TTTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAGCAACGATGGATTTA
*
1313 AAGATTTG
324 AGGATTTG
* * *
1321 TTTTTACAAGCATCTGAACCTTATTTCGATTAAATTAGAAATTAATTCAG------AAA-AAAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAGAAAAA
* *
1379 CGCTATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATAA-TTTTTAGGAGT
66 CGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATA-AATTTTTTATGAGT
* * * * *** *
1443 ATTTGGGAAAAAAATTGAGGTAAAATCTTTCGGGTCACTTTTTGTAAAGTTTTAGATAAAATCAT
130 ATTTGGG-AAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* *
1508 GTAC--ACCATCACGGTTTTACGCTAAAGACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGATT
194 GTACTAACCATCACGGTTTTAGGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGATT
* * *
1571 TTTGGCGCCAAGACTCCTTGAAATATCTATTTTTATCTGATCAAATCTCAGCAATGATGGATTTA
259 TTTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAGCAACGATGGATTTA
1636 AGGATTTG
324 AGGATTTG
* *
1644 ATTTTACGAGCATCTGAATCTTGTTTCGATTAAATTATAAATTAATTCAG------AAA-AAAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAGAAAAA
*
1702 -GATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTA
66 CGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAAATTTTTTATGAGTA
** * * * *
1766 TTCTGGGAAAAAATCAAGGAAAAATATTTCGGGTCAATTTTCGCAAAATTTTAGCTGTAATCGTG
131 TT-TGGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
* * * * *
1831 ---------TCACGTTTTTAGGCTAAAAACGCGTTTTGGGGGGCCCCACTCAGTTTTGCATGATT
195 TACTAACCATCACGGTTTTAGGCTAAAAACGCGTTCT-GGCGGCCCGACTAAGTTTTGCATGATT
* * * * * * * * *
1887 TTTAGCGCCAAGATTCCTTGAGATATCCATATTCATCTAATCAAATCTCTGCAACAATGGATTTA
259 TTTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAGCAACGATGGATTTA
*
1952 AGGATATG
324 AGGATTTG
*
1960 TTTTTACGAGCATCTGAATCTTGTTTCGATAAAATTAGAAATTAATTCAGAGAAAAAAAGAAGAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTC--AGAAAAAAA-AAGAA
* * * * *
2025 AAACGATATTAGAAGCGTGAAAAGCTCTCCAATATTTTTGCCGTTGAATTATATATTTTTTATAA
63 AAACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAAATTTTTTATGA
* * * * *
2090 GTATTCT-CGAAAACAATTAAGGAAAAATATTTCGGGTCAATTTTTGCCAAATTTTAGCCGTAAT
128 GTATT-TGGGAAAA-AATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
* *
2154 CGTGTACTAACTATCACGGTTTTAGGCTAAAAACGCGTTCTGGCGGCCCGACCAAGTTTTGCATG
191 CGTGTACTAACCATCACGGTTTTAGGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATG
* * *
2219 ATTTTTTGCGCCAA-AGCTCCTTGAAATATCTATTCTCATTTGACCAAATCTCAGCAACGATGGA
256 ATTTTTGGCGCCAAGA-CTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAGCAACGATGGA
*
2283 TTTAAAGATTTG
320 TTTAAGGATTTG
2295 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAG-----
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAGAAAAA
* * * *
2355 C--TATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGGTGAATTATATATTTTTTAGGAATA
66 CGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAAATTTTTTATGAGTA
* * * * * * *
2418 TTTGAGAAAAAAATTGACGTAAAATCTTTCAGATCAATTTTCGCAAAATTTTAGCCGAAATCGCG
131 TTTG-GGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
* * * *
2483 TACTAACCATCGCGGTTTTAGGCTAAAAACGCGTTCTGTCGGCCCTACTATGTTTTGCATGATTT
195 TACTAACCATCACGGTTTTAGGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGATTT
* * * * * *
2548 TTGGCGCCAAGACTCCTTGAAATATGTATTTTCATCTAATCAAATCTTAGCAATGATTGATTTAA
260 TTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAGCAACGATGGATTTAA
2613 GGATTTG
325 GGATTTG
* * * *
2620 TTTTTACGAGCATCTGAATCTTGTTACGATTAAATTAAAAATTAGTTCAGAAAAAAAAA-TAAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAGAAAAA
* * *
2684 CGATATTAGAAGCATGAAAAGCCCTCCAATCTTTTTGGCGTTAAATTATATATTTTTTATGAGTA
66 CGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAAATTTTTTATGAGTA
** * * * * *
2749 TTTAGGCCAAAAATTGAGGAAAACAT-ATTCTGATTAATTTTTGCAAAATTTTAGCCAAAATAC-
131 TTT-GGGAAAAAATTGAGGAAAA-ATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT-CG
* * * * * *
2812 TGTACTAATAACCATCACGGTTTTTGGCTAAAAACGCATTCCAGG-GCCCCGGCTTAGTTTTGCA
193 TGTAC---TAACCATCACGGTTTTAGGCTAAAAACGCGTT-CTGGCGGCCCGACTAAGTTTTGCA
* *
2876 TGATTTTTGGTGACAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAG-ACAC-ATT
254 TGATTTTTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAGCA-ACGA-T
*
2939 GGATTTAAGGATTTA
317 GGATTTAAGGATTTG
* * * * * *
2954 TTTTTACGAGTATATTAATATTGTTTCGATTTAAGTAGAAATTAATTCAGAAAAAAAAAAGAAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAG-AAAAAAAAAGAAAA
* * * * * *
3019 ACGATAATAGAAGCGTCAAAAGCCCTCCGATCTTTTTGGCATTGAATTATATATTTCTTATGAGT
65 ACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAAATTTTTTATGAG-
* ** * * * * *
3084 TTTTTGGTCAAAAATTGAGGAATATTATATCGGGTCAATTTTTGTAAAATTTTAGCCGAAATCGT
129 TATTTGGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* * * ** * * *
3149 GTAATATCCATCACGGTTATT-GGCTAAAAACGAGTTCCAG-GGCCCCACTCAGTTTTGCTTGAT
194 GTACTAACCATCACGGTT-TTAGGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGAT
* ** * * * * * *
3212 TTTTTGCGTGAGGACTCCTT-AAAGTATCTATATTCATCT-AACAAATTTCTGCGAC-ATTGGAT
258 TTTTGGCGCCAAGACTCCTTGAAA-TATCTATTTTCATCTGACCAAATCTCAGCAACGA-TGGAT
*
3274 TTAAGGATTTA
321 TTAAGGATTTG
* * * * * ** *
3285 CTTTTATGAGCATCAGAATGTTGTTTTGATTCTATTAGAAATTAATTCTAAAAAAAAAGAAGAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTC-AGAAAAAAA-AAGAAA
* * * * * * * *
3350 AACAATACTAGACGCGTGAAAATCCCTTCAATCTTTTTGACGTTTAATTAT-ATTTTTTCTATGA
64 AACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAAATTTTT-TATGA
* ** * **
3414 TTATTATGGCTAAAAATAGAGGAAAAATCTTTCAAGTCAATTTTTGCAAAATTTTAGCCGAAATC
128 GTATT-TGGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
* * *
3479 GTGTACTAATTC-TCACAGTTTTTGGCTAAAAACGC
192 GTGTACTAA-CCATCACGGTTTTAGGCTAAAAACGC
3514 ATGCCTGAGC
Statistics
Matches: 2756, Mismatches: 347, Indels: 163
0.84 0.11 0.05
Matches are distributed among these distances:
315 24 0.01
316 131 0.05
318 2 0.00
321 1 0.00
322 107 0.04
323 177 0.06
324 2 0.00
325 412 0.15
326 55 0.02
327 118 0.04
328 2 0.00
329 27 0.01
330 244 0.09
331 263 0.10
332 485 0.18
333 268 0.10
334 158 0.06
335 141 0.05
336 135 0.05
337 4 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (331 bp):
TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAGAAAAA
CGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATAAATTTTTTATGAGTA
TTTGGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
ACTAACCATCACGGTTTTAGGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGATTTT
TGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCAGCAACGATGGATTTAAG
GATTTG
Found at i:2265 original size:974 final size:970
Alignment explanation
Indices: 1--3484 Score: 4199
Period size: 974 Copynumber: 3.5 Consensus size: 970
*
1 TTTTTACGAGCATCTGAGTCTTGTTTCGATTAAATTAGAAATTAATTCAG------AAAA-AAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAAGAAAA
* * * **
59 ACGATATTAGAAGCGTGAAAAGCCCTCCAATATTTTTTGCGTTAAATTATATA-ATTTTATGTTT
66 ACGATATTAGAAGCGTGAAAAGCCCTCCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGT
* * *
123 ATTCTGGGAAACAATTGAGGGAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
131 ATTCT-GGAAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* * * **
188 GTACTAACCATCACGGTTTTAGGCTAAATACGAGATCTGGCGGCCCGATGAAGTTTTGCATGATT
195 GTACTAACCATCACGGTTTTAGGCTAAAAACGAGTTCTAGCGGCCCGACCAAGTTTTGCATGATT
* * *
253 TTTGGCGCCATGACTCCTTGAAATATCTATTTTGATCTGACCAAATCTCAGCAACGATGGATTTA
260 TTTGGCGCCAAGACTCCTTGAAATATCTATTCTCATCTGACCAAATCTCAGCAACGATGGATTTA
* *
318 AGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTATAAATTAATTCAGAAAAAAA
325 AAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAG-------
* * *
383 AAAGGAAAAACGATATTAGAAGCGTGAAAA-CCCTCCAATATTTTTGGCGTAGAATTATA-AATT
383 AAA--AAAAACGCTATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATAA-T
* *
446 TTTTAGGAGTATTTGGG-AAAAATTTGAGGTAAAATCTGTCGGGTCAATTTTTGCAAAATTTTAG
445 TTTTAGGAGTATTTGGGAAAAAAATTGAGGTAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAG
*
510 CCGAAATCGTGTACTAACCATCACGGTTTTAAGCTAAAAACGCGTTCTGGCGGCCTGACTAAGTT
510 CCGAAATCGTGTAC-AACCATCACGGTTTTAAGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTT
* * * *
575 TTGCATGATTTTTGGCTCCATGACTCCTTGAAATATCTATTTTCATCTAACAAAATCTCAGCAAC
574 TTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTATC-AAATCTCAGCAAT
* * * *
640 GATGGATTTAAAGATTTGTTTTTACAAGCATCTGAATCTTGTTTCAATTAAATTACAAATTAATT
638 GATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAAAAATTAATT
* *
705 CAGAAAAAAAAACAAAAACGAAATTAGAAGCGTGAAAAGCCCTCCGATCTTTTT-G-GTTGAATT
703 CAG-----AAAA-AAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATT
* * * *
768 AAATATTTTATATGAGTATTATAGGAAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTC-CAA
762 ATATATTTTTTATGAGTATT-TGGGAAAAAATTGAGGAAAAATATTTCGGGTCAA-TTTTCGCAA
* * * * * *
832 AATATTAG-TCGTTATCGTGTACTAACCATCACGGTTTATGGCTAATAACGCGATTTGGGGGCTC
825 AATTTTAGCT-GTAATCGTGT-C--A-CGT----TTTTA-GGCTAAAAACGCG-TTTGGGGGCCC
* *
896 GACTCAGTTTTGCATGATTTTTGGCGCCAAGATTCCTTGAGATATCCATATTTATCTAACCAAAT
879 CACTCAGTTTTGCATGATTTTTGGCGCCAAGATTCCTTGAGATATCCATATTCATCTAACCAAAT
* *
961 CTCTCCAACGATGGATTTAAGGATTTG
944 CTCTGCAACAATGGATTTAAGGATTTG
*
988 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAGGAAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAAGAAAA
* * *
1053 ACGATATTAGAAGCGTGAAAAACCCTCCAATATTTTTGGCGTTGAATTATAAATTTTTTAGGAGT
66 ACGATATTAGAAGCGTGAAAAGCCCTCCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGT
* * *
1118 ATT-TGGGAAAAAATTGAGGTAAAATCTTTCGGGTCAATTTTTGCAAAGTTTTTAGCCGAAATCG
131 ATTCT-GGAAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAA-ATTTTAGCCGAAATCG
* * * *
1182 TGTACTAACTATCACGGTTTTAGGCTAAAAACGTGTTCTAGTGGCCCGACTAAGTTTTGCATGAT
194 TGTACTAACCATCACGGTTTTAGGCTAAAAACGAGTTCTAGCGGCCCGACCAAGTTTTGCATGAT
*
1247 TTTTGGCGCCAAGACTCCTTGAAATATCTATTCTCATCTGACCAAATCTCAACAACGATGGATTT
259 TTTTGGCGCCAAGACTCCTTGAAATATCTATTCTCATCTGACCAAATCTCAGCAACGATGGATTT
* * *
1312 AAAGATTTGTTTTTACAAGCATCTGAACCTTATTTCGATTAAATTAGAAATTAATTCAGAAAAAA
324 AAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAA
1377 AACGCTATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATAATTTTTAGGAG
389 AACGCTATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATAATTTTTAGGAG
* * * *** *
1442 TATTTGGGAAAAAAATTGAGGTAAAATCTTTCGGGTCACTTTTTGTAAAGTTTTAGATAAAATCA
454 TATTTGGGAAAAAAATTGAGGTAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCG
* *
1507 TGTAC-ACCATCACGGTTTTACGCTAAAGACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGATT
519 TGTACAACCATCACGGTTTTAAGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGATT
*
1571 TTTGGCGCCAAGACTCCTTGAAATATCTATTTTTATCTGATCAAATCTCAGCAATGATGGATTTA
584 TTTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCT-ATCAAATCTCAGCAATGATGGATTTA
* *
1636 AGGATTTGATTTTACGAGCATCTGAATCTTGTTTCGATTAAATTATAAATTAATTCAG-AAAAAA
648 AGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAAAAATTAATTCAGAAAAAAA
1700 AA-GATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAG
713 AACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAG
**
1764 TATTCTGGGAAAAAATCAAGGAAAAATATTTCGGGTCAATTTTCGCAAAATTTTAGCTGTAATCG
778 TATT-TGGGAAAAAATTGAGGAAAAATATTTCGGGTCAATTTTCGCAAAATTTTAGCTGTAATCG
*
1829 TGTCACGTTTTTAGGCTAAAAACGCGTTTTGGGGGGCCCCACTCAGTTTTGCATGATTTTTAGCG
842 TGTCACGTTTTTAGGCTAAAAACGCG-TTT-GGGGGCCCCACTCAGTTTTGCATGATTTTTGGCG
* *
1894 CCAAGATTCCTTGAGATATCCATATTCATCTAATCAAATCTCTGCAACAATGGATTTAAGGATAT
905 CCAAGATTCCTTGAGATATCCATATTCATCTAACCAAATCTCTGCAACAATGGATTTAAGGATTT
1959 G
970 G
*
1960 TTTTTACGAGCATCTGAATCTTGTTTCGATAAAATTAGAAATTAATTCAGAGAAAAAAAGAAGAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGA-AAAAAAA-AAGAA
* * *
2025 AAACGATATTAGAAGCGTGAAAAGCTCTCCAATATTTTTGCCGTTGAATTATATATTTTTTATAA
64 AAACGATATTAGAAGCGTGAAAAGCCCTCCAATATTTTTGGCGTTGAATTATATATTTTTTATGA
* * * *
2090 GTATTCTCGAAAACAATTAAGGAAAAATATTTCGGGTCAATTTTTGCCAAATTTTAGCCGTAATC
129 GTATTCTGGAAAA-AATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
* * *
2155 GTGTACTAACTATCACGGTTTTAGGCTAAAAACGCGTTCTGGCGGCCCGACCAAGTTTTGCATGA
193 GTGTACTAACCATCACGGTTTTAGGCTAAAAACGAGTTCTAGCGGCCCGACCAAGTTTTGCATGA
* *
2220 TTTTTTGCGCCAA-AGCTCCTTGAAATATCTATTCTCATTTGACCAAATCTCAGCAACGATGGAT
258 TTTTTGGCGCCAAGA-CTCCTTGAAATATCTATTCTCATCTGACCAAATCTCAGCAACGATGGAT
2284 TTAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAA
322 TTAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAA
* * *
2349 AAAAAGCTATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGGTGAATTATATATTTTTTAGG
387 AAAACGCTATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATAATTTTTAGG
* * * * * *
2414 AATATTTGAGAAAAAAATTGACGTAAAATCTTTCAGATCAATTTTCGCAAAATTTTAGCCGAAAT
452 AGTATTTGGGAAAAAAATTGAGGTAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
* * * * * *
2479 CGCGTACTAACCATCGCGGTTTTAGGCTAAAAACGCGTTCTGTCGGCCCTACTATGTTTTGCATG
517 CGTGTAC-AACCATCACGGTTTTAAGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATG
* * *
2544 ATTTTTGGCGCCAAGACTCCTTGAAATATGTATTTTCATCTAATCAAATCTTAGCAATGATTGAT
581 ATTTTTGGCGCCAAGACTCCTTGAAATATCTATTTTCATCT-ATCAAATCTCAGCAATGATGGAT
* *
2609 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTACGATTAAATTAAAAATTAGTTCAGAAAA
645 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAAAAATTAATTCAG----
* *
2674 AAAAATAAAACGATATTAGAAGCATGAAAAGCCCTCCAATCTTTTTGGCGTTAAATTATATATTT
706 AAAAA-AAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATATTT
** * * * *
2739 TTTATGAGTATTTAGGCCAAAAATTGAGGAAAACATA-TTCTGATTAATTTTTGCAAAATTTTAG
770 TTTATGAGTATTT-GGGAAAAAATTGAGGAAAA-ATATTTCGGGTCAATTTTCGCAAAATTTTAG
** * *** *
2803 CCAAAATACTGTACTAATAAC-CATCACGGTTTTT-GGCTAAAAACGCATTCCAGGGCCCCGGCT
833 --------CTG---TAAT--CGTGTCAC-GTTTTTAGGCTAAAAACGCGTTTGGGGGCCCC-ACT
* * * * * * * * *
2866 TAGTTTTGCATGATTTTTGGTGACAAGACTCCTTGAAATATCTATTTTCATCTGACCAAATCTCA
883 CAGTTTTGCATGATTTTTGGCGCCAAGATTCCTTGAGATATCCATATTCATCTAACCAAATCTCT
* *
2931 G-ACACATTGGATTTAAGGATTTA
948 GCA-ACAATGGATTTAAGGATTTG
* * * * * *
2954 TTTTTACGAGTATATTAATATTGTTTCGATTTAAGTAGAAATTAATTCAGAAAAAAAAAAGAAAA
1 TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAAGAAAA
* * * * * *
3019 ACGATAATAGAAGCGTCAAAAGCCCTCCGATCTTTTTGGCATTGAATTATATATTTCTTATGAGT
66 ACGATATTAGAAGCGTGAAAAGCCCTCCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGT
* * * * * * *
3084 TTTTTGGTCAAAAATTGAGGAATATTATATCGGGTCAATTTTTGTAAAATTTTAGCCGAAATCGT
131 ATTCTGG-AAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* * * * *
3149 GTAATATCCATCACGGTTATT-GGCTAAAAACGAGTTCCAG-GGCCCCACTC-AGTTTTGCTTGA
195 GTACTAACCATCACGGTT-TTAGGCTAAAAACGAGTTCTAGCGGCCCGAC-CAAGTTTTGCATGA
* ** * * * * *
3211 TTTTTTGCGTGAGGACTCCTT-AAAGTATCTATAT-TCATCT-AACAAATTTCTGCGAC-ATTGG
258 TTTTTGGCGCCAAGACTCCTTGAAA-TATCTAT-TCTCATCTGACCAAATCTCAGCAACGA-TGG
* ** * * * * ** *
3272 ATTTAAGGATTTACTTTTATGAGCATCAGAATGTTGTTTTGATTCTATTAGAAATTAATTCTAAA
320 ATTTAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTC-AGA
* * * * * * *
3337 AAAAAAGAAGAAAAACAATACTAGACGCGTGAAAATCCCTTCAATCTTTTTGACGTTTAATTATA
384 AAAAAA-ACG-----C--TATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATA
* * * ** * * **
3402 T-TTTTTCTATGATTATTAT-GGCTAAAAATAGAGGAAAAATCTTTCAAGTCAATTTTTGCAAAA
441 TAATTTT-TAGGAGTATT-TGGGAAAAAAATTGAGGTAAAATCTTTCGGGTCAATTTTTGCAAAA
3465 TTTTAGCCGAAATCGTGTAC
504 TTTTAGCCGAAATCGTGTAC
3485 TAATTCTCAC
Statistics
Matches: 2191, Mismatches: 238, Indels: 124
0.86 0.09 0.05
Matches are distributed among these distances:
971 15 0.01
972 146 0.07
973 8 0.00
974 388 0.18
975 33 0.02
976 169 0.08
977 1 0.00
978 33 0.02
979 12 0.01
980 78 0.04
981 5 0.00
982 5 0.00
983 102 0.05
984 3 0.00
986 190 0.09
987 96 0.04
988 57 0.03
989 1 0.00
990 70 0.03
991 57 0.03
992 150 0.07
993 23 0.01
994 219 0.10
995 213 0.10
996 7 0.00
997 1 0.00
998 5 0.00
999 103 0.05
1000 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (970 bp):
TTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAAAAGAAAA
ACGATATTAGAAGCGTGAAAAGCCCTCCAATATTTTTGGCGTTGAATTATATATTTTTTATGAGT
ATTCTGGAAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
TACTAACCATCACGGTTTTAGGCTAAAAACGAGTTCTAGCGGCCCGACCAAGTTTTGCATGATTT
TTGGCGCCAAGACTCCTTGAAATATCTATTCTCATCTGACCAAATCTCAGCAACGATGGATTTAA
AGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAGAAATTAATTCAGAAAAAAAA
CGCTATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATAATTTTTAGGAGTA
TTTGGGAAAAAAATTGAGGTAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
TACAACCATCACGGTTTTAAGCTAAAAACGCGTTCTGGCGGCCCGACTAAGTTTTGCATGATTTT
TGGCGCCAAGACTCCTTGAAATATCTATTTTCATCTATCAAATCTCAGCAATGATGGATTTAAGG
ATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTAAATTAAAAATTAATTCAGAAAAAAAAAC
GATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTAT
TTGGGAAAAAATTGAGGAAAAATATTTCGGGTCAATTTTCGCAAAATTTTAGCTGTAATCGTGTC
ACGTTTTTAGGCTAAAAACGCGTTTGGGGGCCCCACTCAGTTTTGCATGATTTTTGGCGCCAAGA
TTCCTTGAGATATCCATATTCATCTAACCAAATCTCTGCAACAATGGATTTAAGGATTTG
Found at i:4254 original size:322 final size:316
Alignment explanation
Indices: 3654--4267 Score: 766
Period size: 322 Copynumber: 1.9 Consensus size: 316
3644 AAATCCCACA
* ** * **
3654 AATCTTTTTGACGTTGAATTATATATTTTTTAAGAGTATTGTGGCTAAAAGTTGAGGAAAAATCT
1 AATCTTTTTGACGTTGAATTAAATATTTTCCAAGAGTATTGTGGCCAAAAAATGAGGAAAAATCT
* * * *
3719 TTCGAGTCAATTTTTGCAAAATTTTATCCGAAATAGTGTACATTATGGTTTTGGGCTAAAAAACG
66 TTCGAGTCAATTTTCGCAAAATTTTAGCCGAAATAGTGTACATCATGATTTTGGGCTAAAAAACG
* * ** * * *
3784 TCCCTAGGCCCCGGCTAAGTTTTGCATGTTTTTTGGTGCTTAGACTCCTTGAAATATCTATATTC
131 TCCCTAGGCCCCGACAAAGTTTTGCATGTTTTTTGGTGCCAAGACTCCTTGAAATACCTATAATA
*** * * *
3849 ATCTAAGCAAATCTGGGCAACATTTGATTTAAGGACTTGTATTCACGAGCATCTGAATATTGTTT
196 ATCTAAGCAAATCTCAACAAAATCTGATTTAAGGAATTGTATTCACGAGCATCTGAATATTGTTT
*
3914 CGATTTTATTATAAATTAATTCAGAAAAAAAAGGTAAAACTATATTAGAACCCTTC
261 CGATTTTATTAGAAATTAATTCAGAAAAAAAAGGTAAAACTATATTAGAACCCTTC
* * * * *
3970 AATCTTTTTTACTTTGAGTTAAATATTTTCCATGATTATTGTGGCCAAAAAATGAGGAAAAATCT
1 AATCTTTTTGACGTTGAATTAAATATTTTCCAAGAGTATTGTGGCCAAAAAATGAGGAAAAATCT
* * *
4035 TTCGGGTCAATTTTCGCAAAATTTTAGCCGAAATCGTGTACTAACCCTCATGATTTTTGGCTAAA
66 TTCGAGTCAATTTTCGCAAAATTTTAGCCGAAATAGTGTAC--A---TCATGATTTTGGGCTAAA
* *
4100 AACGCGTTCC-AGGTCCCCGACAAAGTTTTGCATGATTTTTT-GTGCCAAGACTCCTTGAAATAC
126 AA-ACGTCCCTAGG-CCCCGACAAAGTTTTGCATG-TTTTTTGGTGCCAAGACTCCTTGAAATAC
* * * *
4163 CTATAATAATCTAA-CAAAATCTCAACAAAATCTGATTTAAGGAATTGTTTTTATGATCATCTGA
188 CTATAATAATCTAAGC-AAATCTCAACAAAATCTGATTTAAGGAATTGTATTCACGAGCATCTGA
* *
4227 ATATTGTTTCGATTTTATTAGAAATTAATTCGGGAAAAAAA
252 ATATTGTTTCGATTTTATTAGAAATTAATTCAGAAAAAAAA
4268 TCGAAAGATA
Statistics
Matches: 249, Mismatches: 40, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
316 91 0.37
318 1 0.00
321 21 0.08
322 130 0.52
323 6 0.02
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.37
Consensus pattern (316 bp):
AATCTTTTTGACGTTGAATTAAATATTTTCCAAGAGTATTGTGGCCAAAAAATGAGGAAAAATCT
TTCGAGTCAATTTTCGCAAAATTTTAGCCGAAATAGTGTACATCATGATTTTGGGCTAAAAAACG
TCCCTAGGCCCCGACAAAGTTTTGCATGTTTTTTGGTGCCAAGACTCCTTGAAATACCTATAATA
ATCTAAGCAAATCTCAACAAAATCTGATTTAAGGAATTGTATTCACGAGCATCTGAATATTGTTT
CGATTTTATTAGAAATTAATTCAGAAAAAAAAGGTAAAACTATATTAGAACCCTTC
Found at i:7094 original size:27 final size:27
Alignment explanation
Indices: 7053--7224 Score: 209
Period size: 27 Copynumber: 6.1 Consensus size: 27
7043 CCTAAAAGTG
*
7053 AACTATATGCTATAACGATAGACCTAA
1 AACTATATGCAATAACGATAGACCTAA
*
7080 AACTATATGCAATAACGATGGACCTAAAATA
1 AACTATATGCAATAACGATAGACCT---A-A
** * *
7111 AACTATATGTTACAACGATGGACCTAA
1 AACTATATGCAATAACGATAGACCTAA
7138 AACTATATGCAATAACGATAGACCTAAAA
1 AACTATATGCAATAACGATAGACCT--AA
*
7167 TCAACTATATGCTATAACGATAGACCTAA
1 --AACTATATGCAATAACGATAGACCTAA
7196 AACTATATGCAATAACGATAGACCTAA
1 AACTATATGCAATAACGATAGACCTAA
7223 AA
1 AA
7225 TGAAATTGAA
Statistics
Matches: 126, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
27 73 0.58
28 1 0.01
29 4 0.03
30 1 0.01
31 47 0.37
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (27 bp):
AACTATATGCAATAACGATAGACCTAA
Found at i:7129 original size:58 final size:58
Alignment explanation
Indices: 7042--7225 Score: 305
Period size: 58 Copynumber: 3.2 Consensus size: 58
7032 ATATGGAGAA
* *
7042 ACCTAAAAGTGAACTATATGCTATAACGATAGACCTAAAACTATATGCAATAACGATGG
1 ACCTAAAA-TAAACTATATGCTATAACGATAGACCTAAAACTATATGCAATAACGATAG
* * *
7101 ACCTAAAATAAACTATATGTTACAACGATGGACCTAAAACTATATGCAATAACGATAG
1 ACCTAAAATAAACTATATGCTATAACGATAGACCTAAAACTATATGCAATAACGATAG
*
7159 ACCTAAAATCAACTATATGCTATAACGATAGACCTAAAACTATATGCAATAACGATAG
1 ACCTAAAATAAACTATATGCTATAACGATAGACCTAAAACTATATGCAATAACGATAG
7217 ACCTAAAAT
1 ACCTAAAAT
7226 GAAATTGAAC
Statistics
Matches: 116, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
58 108 0.93
59 8 0.07
ACGTcount: A:0.46, C:0.18, G:0.12, T:0.24
Consensus pattern (58 bp):
ACCTAAAATAAACTATATGCTATAACGATAGACCTAAAACTATATGCAATAACGATAG
Found at i:22662 original size:12 final size:12
Alignment explanation
Indices: 22645--22681 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
22635 CAACTCTAGG
*
22645 TTGCCCTTGCCC
1 TTGCCCTTGACC
22657 TTGCCCTTGACC
1 TTGCCCTTGACC
*
22669 TTGACCTTGACC
1 TTGCCCTTGACC
22681 T
1 T
22682 GCAGGAGGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.08, C:0.41, G:0.16, T:0.35
Consensus pattern (12 bp):
TTGCCCTTGACC
Found at i:40487 original size:132 final size:132
Alignment explanation
Indices: 40200--40493 Score: 299
Period size: 132 Copynumber: 2.2 Consensus size: 132
40190 GACAACTACT
* * * * * ** *
40200 TTTGGATCTTCTAGAGGAGATGAGTAACCCATTCTGCTAGCTCCAGCTGACGCAGCACCAAGGTT
1 TTTGGAACTTCTAAAGCAGATGAATAACCCATTATGCTAGCTCCAGCTGACAAAGCACCAAGGCT
* * * * * *
40265 GGGTTCAGGTCGAAGTCCAGCACTTTGACTAATCCCAGCAGGATCATCCTGATTTTGGCCAAATA
66 CGGTTCAGGTCGAAGTCCAGCACTTGGACTAATCCCAGCAGAAGCATCCCGATTCTGGCCAAATA
40330 AA
131 AA
* * * * * * *
40332 TGT-GAATCTTC-AAGAGTAAATGAATAACCCTTTATGCTAGCTCCGGCTGATAAAGCACCAATG
1 TTTGGAA-CTTCTAA-AGCAGATGAATAACCCATTATGCTAGCTCCAGCTGACAAAGCACCAAGG
* * *
40395 CTCGGTTCAGGTCTAATTCCAGCACTTGGACTAATGCCTA-CAGAAGCATCCCG-TCTCTGGCCA
64 CTCGGTTCAGGTCGAAGTCCAGCACTTGGACTAAT-CCCAGCAGAAGCATCCCGAT-TCTGGCCA
*
40458 ACTAAA
127 AATAAA
40464 TTTGGAACTTCTAAAGCAGATGAATAACCC
1 TTTGGAACTTCTAAAGCAGATGAATAACCC
40494 CTAATGGTTG
Statistics
Matches: 129, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
131 4 0.03
132 117 0.91
133 8 0.06
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (132 bp):
TTTGGAACTTCTAAAGCAGATGAATAACCCATTATGCTAGCTCCAGCTGACAAAGCACCAAGGCT
CGGTTCAGGTCGAAGTCCAGCACTTGGACTAATCCCAGCAGAAGCATCCCGATTCTGGCCAAATA
AA
Found at i:51508 original size:28 final size:27
Alignment explanation
Indices: 51460--51514 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
51450 GTTTTATTTG
*
51460 AGTTTGTTTTTGAGTCGGTTT-GAGTC
1 AGTTTGTTTTTGAGTCAGTTTCGAGTC
51486 AGTTTGTTTTTTCGAGTCAGTTTCGAGTC
1 AGTTTG-TTTTT-GAGTCAGTTTCGAGTC
51515 TAGTCTCAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 6 0.24
27 5 0.20
28 9 0.36
29 5 0.20
ACGTcount: A:0.13, C:0.11, G:0.27, T:0.49
Consensus pattern (27 bp):
AGTTTGTTTTTGAGTCAGTTTCGAGTC
Found at i:71119 original size:17 final size:16
Alignment explanation
Indices: 71079--71127 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
71069 CATGTAATCT
*
71079 TTGATCACCGGTGATC
1 TTGATCACTGGTGATC
71095 TTGCATCACTGGTGATC
1 TTG-ATCACTGGTGATC
*
71112 TTAGATCACTAGTGAT
1 TT-GATCACTGGTGAT
71128 TTGGGGGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 3 0.10
17 25 0.86
18 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (16 bp):
TTGATCACTGGTGATC
Found at i:71203 original size:23 final size:23
Alignment explanation
Indices: 71173--71221 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
71163 GTGAGCTGTA
71173 ATTAAGTTAACAATTTCAAAGGG
1 ATTAAGTTAACAATTTCAAAGGG
71196 ATTAAGTTAACAATTTCAAAGGG
1 ATTAAGTTAACAATTTCAAAGGG
71219 ATT
1 ATT
71222 GATACAGACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (23 bp):
ATTAAGTTAACAATTTCAAAGGG
Found at i:75348 original size:6 final size:6
Alignment explanation
Indices: 75337--75361 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
75327 AAGATACACT
75337 CGGGTC CGGGTC CGGGTC CGGGTC C
1 CGGGTC CGGGTC CGGGTC CGGGTC C
75362 CCAATCAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.36, G:0.48, T:0.16
Consensus pattern (6 bp):
CGGGTC
Found at i:77543 original size:49 final size:49
Alignment explanation
Indices: 77488--77585 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
77478 CCAACATGAA
77488 TTGTTATGCATAGCTAAATTCATGATGAATCTTACTATTTGTGTTCTTT
1 TTGTTATGCATAGCTAAATTCATGATGAATCTTACTATTTGTGTTCTTT
*
77537 TTGTTATGCATAGCTGAATTCATGATGAATCTTACTATTTGTGTTCTTT
1 TTGTTATGCATAGCTAAATTCATGATGAATCTTACTATTTGTGTTCTTT
77586 ATATAATATC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.49
Consensus pattern (49 bp):
TTGTTATGCATAGCTAAATTCATGATGAATCTTACTATTTGTGTTCTTT
Found at i:93016 original size:22 final size:22
Alignment explanation
Indices: 92988--93034 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
92978 AATGGATTCC
92988 CATCTGATTATCCATTTTGAGA
1 CATCTGATTATCCATTTTGAGA
93010 CATCTGATTATCCATTTTGAGA
1 CATCTGATTATCCATTTTGAGA
93032 CAT
1 CAT
93035 TGAATTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (22 bp):
CATCTGATTATCCATTTTGAGA
Found at i:100141 original size:24 final size:21
Alignment explanation
Indices: 100112--100172 Score: 61
Period size: 24 Copynumber: 2.8 Consensus size: 21
100102 TAAATTTCTC
100112 TAAATTTTTACAAATTATTGAGAA
1 TAAATTTTTA-AAATTATT--GAA
*
100136 TAAATTAATTAAAATT-TTGAA
1 TAAATT-TTTAAAATTATTGAA
*
100157 TTAATTTTTAAAATTA
1 TAAATTTTTAAAATTA
100173 ATTTCTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
20 8 0.25
21 8 0.25
23 2 0.06
24 11 0.34
25 3 0.09
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.46
Consensus pattern (21 bp):
TAAATTTTTAAAATTATTGAA
Found at i:100162 original size:21 final size:20
Alignment explanation
Indices: 100133--100171 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
100123 AAATTATTGA
100133 GAATAAATTAATTAAAATTTT
1 GAATAAATT-ATTAAAATTTT
* *
100154 GAATTAATTTTTAAAATT
1 GAATAAATTATTAAAATT
100172 AATTTCTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
GAATAAATTATTAAAATTTT
Found at i:100803 original size:303 final size:300
Alignment explanation
Indices: 100176--102144 Score: 864
Period size: 317 Copynumber: 6.3 Consensus size: 300
100166 AAAATTAATT
* * * *
100176 TCTAATTAAATCGAAATAAGATTTAAATACTCGTAAAAACAAATCCTTAAATCCAATATGCCTGA
1 TCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTG-CTGA
* * * * *
100241 AACTTGATTAGAT-AATATAGATATTTCAAGGAGTCTCGGCGCAAAAAATAATGCAAAACTAAGC
65 GATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAAAGC
*
100305 CGGGACCCAGAACACGTTTTTAGCCAAAAACCATGATGGTAAAATTGACCCGAAAGATTTTTCCT
130 CGGGACCCAGAACACGTTTTTAGCCAAAAACCATGATGGTAAAATTGACCCAAAAGATTTTTCCT
* * *
100370 CGATTTTGGCAAAATACTCATAAAATATATATTATTCAACGCCAAAAAGATTGGAGGAGTTTTTA
195 CAATTTTGGCAAAATACTCATAAAAAATATATTATTCAACGCCAAAAAGATTGGAGGAGTTTTCA
* * * * **
100435 CGTTTTTAATATCGTTTTTCATTTTTTTTTCAGAATTAATT
260 CGCTTCTAATATCGTTTTCCATTTTTTGTTCAGAATTAAAA
* * * *
100476 TCTAATTGAATCAAAACAAGATTCAAATGCACGTAAAAACAAATCCTTAAATCGAATGTAGCTGA
1 TCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGT-GCTGA
* *
100541 GATTTGATTAGATGAATAAAGATATATCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAAAGC
65 GATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAAAGC
* * ** * * *
100606 CGTGGCCCCGGAACACGCTTTTT-G-TGAACACGAT-TTCGGCTAAAAATTGACCCAAAA-AGTT
130 CG-GGACCCAGAACACG-TTTTTAGCCAAAAACCATGAT-GG-T-AAAATTGACCCAAAAGA-TT
* * *
100667 TTTTCTCAATTTTTTTGTCACAATACTCA-AAAAAATAT-TTAATTCAACGCCAAAAAGATT-GA
189 TTTCCTCAA---TTTTGGCAAAATACTCATAAAAAATATATT-ATTCAACGCCAAAAAGATTGGA
*
100729 CGG-GCTTTTCACGCTTCTAATATTGTTTTCCA-TTTTTGTTC-GAATTAAAA
250 -GGAG-TTTTCACGCTTCTAATATCGTTTTCCATTTTTTGTTCAGAATTAAAA
* * * * *
100779 TCTAATTAAATCGAAACCAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCAATGTGGT-TG
1 TCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGCTGAG
* ** **
100843 ATTT-AGTTAGATGAATATATATATTTCAAGGAGTCT-TTCTGCCAAAAATCATGCAAAACTGAG
66 ATTTGA-TTAGATGAATATAGATATTTCAAGGAGTCTCGGC-GCCAAAAATCATGCAAAACAAAG
* * * * **
100906 TCGGGGTCCC-GAAACGCGTTTTTAGCGAAAAATAGGGATGATTAGTTCACGATTTTGGCTAAAA
129 -CCGGGACCCAG-AACACGTTTTTAGC----CA-A---A--A--A---C-C-ATGATGG-TAAAA
* * * ** * * * *
100970 CTGAACCAAAA-AGTTTTT-CTGAAAATTTTTCCACAATACTCAGAAAAAATATATAATTCAACA
174 TTGACCCAAAAGA-TTTTTCCT--CAATTTTGGCAAAATACTCATAAAAAATATATTATTCAACG
* * *
101033 CTAAAAA-AGTTGAAGG-GTTTTACACGCTTCTAATA-----TT---TTTTTT-TCCA-AATTAA
236 CCAAAAAGA-TTGGAGGAGTTTT-CACGCTTCTAATATCGTTTTCCATTTTTTGTTCAGAATTAA
**
101086 CT
299 AA
* * * * * * *
101088 TTTATTTAAATTGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTATATCTAATGTGGCTGA
1 TCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGT-GCTGA
* * * * ***
101153 GATTTGGTTCGATGAATATAG--A--TCAATGAGTCAT-TGCGCCAAAAATCATGCAAAATTGAG
65 GATTTGATTAGATGAATATAGATATTTCAAGGAGTC-TCGGCGCCAAAAATCATGCAAAACAAAG
* * * *
101213 CTGGGGCTCCAGAACGCGTTTTTAGCCAAATACCGTGATGGTTAGTACACGATTTCGGATAAAAA
129 CCGGGAC-CCAGAACACGTTTTTAGCCAAAAACC---------A-T----GA--T-GG-T-AAAA
* * * * * * * *
101278 TTGACCCGAAAA-CTTTTTTCTCATTTTTTTGCCACACTACTC-TGAAAAATATATAATTCAACG
174 TTGACCC-AAAAGATTTTTCCTCA--ATTTTGGCAAAATACTCATAAAAAATATATTATTCAACG
* * * * * * * * *
101341 CAAAAAAAATTGAAGG-GTTTTTCACGCTTCCAATATCATTTTCCCTTTTTTTTTTCCGAATTTA
236 CCAAAAAGATTGGAGGAG-TTTTCACGCTTCTAATATCGTTTT-CCATTTTTTGTTCAGAATTAA
**
101405 TT
299 AA
* * * * ** *
101407 TTTAATTAAATTGAAACAAGATTCAGATGTTCGTTGAAACAAATCCTTAAATCTAAAT-TGGCTG
1 TCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATC-CAATGT-GCTG
* * *
101471 AGATTT-AGTTATATGAATATAGATATTTCAAGGAGTCTTTCGG-G-AAAAAATCATGCAAAACT
64 AGATTTGA-TTAGATGAATATAGATATTTCAAGGAGTC--TCGGCGCCAAAAATCATGCAAAACA
* *
101533 AAGCCAGGGACCC-GAAACAAGTTTTTAGTCAAAAACCATGATGTACACAATTTCGGCTAAAAAT
126 AAGCC-GGGACCCAG-AACACGTTTTTAGCCAAAAACC---ATG------A--T-GG-T-AAAAT
*** * * * * * * *
101597 TGACCCGAAATCTTTTTTTCTCATTTTTTGCTACACTACT-TTGAAAAAATATA--ATTCAACAC
175 TGACCC-AAAAGATTTTTCCTCAATTTTGGC-AAAATACTCAT-AAAAAATATATTATTCAACGC
* * ** * **
101659 CAAAAAAATTGGAGG-GTTTTTCACGCTTCCAATATCGTTTTTTGATTTTTTTTTCCA-AATTTC
237 CAAAAAGATTGGAGGAG-TTTTCACGCTTCTAATATCG-TTTTCCATTTTTTGTT-CAGAATTAA
**
101722 TT
299 AA
* * *
101724 TTTAATTAAATTGAAACAAGATTCCAATGCTCGTAAAAACAAATCCTTAAATCCAACT-TGGCTG
1 TCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAA-TGT-GCTG
* * **** ***
101788 AGATTTGGTTATATGAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAAT-ATGCAAAATTGAG
64 AGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAAAG
* * ** * *
101852 CCGGGGCCCCAAAATGCATTTTTAGCCAAAAACCGCGATGTTTAATACACGATTTCGGCGAAATA
129 CC-GGGACCCAGAACACGTTTTTAGCCAAAAA-C-C--------AT----GA--T-GG-TAAA-A
* ** * ** * * *
101917 TTGACCCGAAATCTTTTTTCTCAATTTTTTACCACAATACTC-TGAAAAAA-ATATAATTAAACG
174 TTGACCCAAAAGATTTTTCCTCAA--TTTTGGCAAAATACTCAT-AAAAAATATATTATTCAACG
* * *
101980 CCAAAAAGATT-GACGG-GATTTTCACGCTTCTAATATCATTTTTCCA-TTTTT-TTCCGAATTT
236 CCAAAAAGATTGGA-GGAG-TTTTCACGCTTCTAATATC-GTTTTCCATTTTTTGTTCAGAATTA
**
102041 ATT
298 AAA
* * * * * *
102044 TCTAATTAAATCGAAACAAGAATCAGATACACGTAAAAGCAAATCCTTAAATCCAATTTGGCTGA
1 TCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGT-GCTGA
* *
102109 GATTTGGTTAGATGGATATAGATATTTCAA-GAGTCT
65 GATTTGATTAGATGAATATAGATATTTCAAGGAGTCT
102145 TTCTGCAAAA
Statistics
Matches: 1332, Mismatches: 202, Indels: 251
0.75 0.11 0.14
Matches are distributed among these distances:
291 1 0.00
292 1 0.00
295 1 0.00
299 2 0.00
300 76 0.06
301 121 0.09
302 20 0.02
303 88 0.07
304 13 0.01
305 51 0.04
306 21 0.02
307 52 0.04
308 62 0.05
309 85 0.06
310 8 0.01
311 17 0.01
312 3 0.00
313 2 0.00
314 1 0.00
315 1 0.00
316 58 0.04
317 212 0.16
318 63 0.05
319 112 0.08
320 115 0.09
321 39 0.03
322 48 0.04
323 51 0.04
324 6 0.00
325 1 0.00
327 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (300 bp):
TCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGCTGAG
ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAAAGCC
GGGACCCAGAACACGTTTTTAGCCAAAAACCATGATGGTAAAATTGACCCAAAAGATTTTTCCTC
AATTTTGGCAAAATACTCATAAAAAATATATTATTCAACGCCAAAAAGATTGGAGGAGTTTTCAC
GCTTCTAATATCGTTTTCCATTTTTTGTTCAGAATTAAAA
Found at i:102093 original size:320 final size:320
Alignment explanation
Indices: 100633--102323 Score: 1739
Period size: 317 Copynumber: 5.3 Consensus size: 320
100623 CTTTTTGTGA
* * *
100633 ACACGATTTCGGCTAAAAATTGACCCAAAAAGTTTTTTCTCAATTTTTTTGTCACAATACTC--A
1 ACACGATTTCGGCTAAAAATTGACCCGAAAACTTTTTTCTCAA-TTTTTTGCCACAATACTCTGA
* * *
100696 AAAAAATATTTAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATAT--TGTTTTC
65 AAAAAATA--TAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCAT-TTTTC
* ** * * *
100759 CATTTTTGTT-CGAATTAAAATCTAATTAAATCGAAACCAGATTCAGATGCTCGTAAAAATAAAT
127 CATTTTT-TTCCGAATTTATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAAT
* * *
100823 CCTTAAATCCAATGTGG-T-TGATTTAGTTAGATGAATATATATATTTCAAGGAGTCTTTCTGCC
191 CCTTAAATCCAAT-TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCC
* * * * ** * *
100886 AAAAATCATGCAAAACTGAGTCGGGGTCCCGAAACGCGTTTTTAGCGAAAAATAGGGATGATTAG
255 AAAAATCATGCAAAATTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGCGATGGTTAG
100951 T
320 T
* * * * ** * * *
100952 TCACGATTTTGGCT-AAAACTGAACC-AAAAAGTTTTTCTGAAAATTTTT-CCACAATACTCAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAACTTTTTTCT-CAATTTTTTGCCACAATACTCTGA
* * * *
101014 AAAAATATATAATTCAACACTAAAAAAGTTGAAGGGTTTTACACGCTTCT-A-AT-A---TT---
65 AAAAA-ATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCATTTTTCCA
* * * *
101070 TTTTTTTCCAAATTAACTTT-TATTTAAATTGAAACAAGATTCAGATGCTTGTAAAAACAAATCC
129 TTTTTTTCCGAATTTA-TTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
* * * * *
101134 TTATATCTAATGTGGCTGAGATTTGGTTCGATGAATATAG--A--TCAATGAGTCATTGC-GCCA
193 TTAAATCCAAT-TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTC-TTTCTGCCA
* * * *
101194 AAAATCATGCAAAATTGAGCTGGGGCTCC-AGAACGCGTTTTTAGCCAAATACCGTGATGGTTAG
256 AAAATCATGCAAAATTGAGCCGGGGCCCCGA-AACGCGTTTTTAGCCAAAAACCGCGATGGTTAG
101258 T
320 T
* * *
101259 ACACGATTTCGGATAAAAATTGACCCGAAAACTTTTTTCTCATTTTTTTGCCACACTACTCTGAA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAA
* * * * *
101324 AAATATATAATTCAACGCAAAAAAAATTGAAGGGTTTTTCACGCTTCCAATATCATTTTCCCTTT
66 AAAAATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCATTTTTCC--A
* * **
101389 TTTTTTTCCGAATTTATTTTTAATTAAATTGAAACAAGATTCAGATGTTCGTTGAAACAAATCCT
129 TTTTTTTCCGAATTTATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
* * * * **
101454 TAAATCTAAATTGGCTGAGATTTAGTTATATGAATATAGATATTTCAAGGAGTCTTTCGGGAAAA
194 TAAATC-CAATTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAA
* * * * ** * *
101519 AATCATGCAAAACTAAGCCAGGGACCCGAAACAAGTTTTTAGTCAAAAA-C-C-AT-GAT-GT
258 AATCATGCAAAATTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGCGATGGTTAGT
* * * * *
101577 ACACAATTTCGGCTAAAAATTGACCCGAAATCTTTTTTTCTC-ATTTTTTGCTACACTACTTTG-
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAC-TTTTTTCTCAATTTTTTGCCACAATACTCTGA
* * * * **
101640 AAAAAATATAATTCAACACCAAAAAAATTGGAGGGTTTTTCACGCTTCCAATATCGTTTTTTGAT
65 AAAAAATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCATTTTTCCA-
* * *
101705 TTTTTTTTCCAAATTTCTTTTTAATTAAATTGAAACAAGATTCCA-ATGCTCGTAAAAACAAATC
129 -TTTTTTTCCGAATTTATTTCTAATTAAATTGAAACAAGATT-CAGATGCTCGTAAAAACAAATC
* *
101769 CTTAAATCCAACTTGGCTGAGATTTGGTTATATGAATATAGATATTTCAAGGAGTCTTTTTGCCA
192 CTTAAATCCAA-TTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCA
* * * * *
101834 AAAAT-ATGCAAAATTGAGCCGGGGCCCCAAAATGCATTTTTAGCCAAAAACCGCGATGTTTAAT
256 AAAATCATGCAAAATTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGCGATGGTTAGT
* * * *
101898 ACACGATTTCGGCGAAATATTGACCCGAAATCTTTTTTCTCAATTTTTTACCACAATACTCTGAA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAA
* * * *
101963 AAAAATATAATTAAACGCCAAAAAGATTGACGGGATTTTCACGCTTCTAATATCATTTTTCCATT
66 AAAAATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCATTTTTCCATT
* * * * *
102028 TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGAATCAGATACACGTAAAAGCAAATCCTTA
131 TTTTTCCGAATTTATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA
* *
102093 AATCCAATTTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAA-GAGTCTTTCTGCAAAAAA
196 AATCCAA-TTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAA
* * ** * * * * *
102157 TCATGCGAAATTGAGCAGGGGTTCCGGAATGCGTTTTTAACTAAAAACCGTGATGGTTAGT
260 TCATGCAAAATTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGCGATGGTTAGT
*** * * *
102218 ACACGATTTCAAAT-AAAATTGACTCGAAAACTTTTTTTCTCATTTTTTTGCCACACA-ACTCTA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAC-TTTTTTCTCAATTTTTTGCCACA-ATACTCTG
*
102281 AAAAAATATATAATTGAACGCCAAAAAAAAATTGAAGGGTTTT
64 AAAAAA-ATATAATTCAACGCC--AAAAAAATTGAAGGGTTTT
Statistics
Matches: 1135, Mismatches: 185, Indels: 100
0.80 0.13 0.07
Matches are distributed among these distances:
306 1 0.00
307 76 0.07
308 59 0.05
309 93 0.08
310 4 0.00
311 19 0.02
312 2 0.00
314 1 0.00
315 2 0.00
316 48 0.04
317 222 0.20
318 72 0.06
319 145 0.13
320 203 0.18
321 63 0.06
322 58 0.05
323 66 0.06
324 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Consensus pattern (320 bp):
ACACGATTTCGGCTAAAAATTGACCCGAAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAA
AAAAATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCATTTTTCCATT
TTTTTCCGAATTTATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA
AATCCAATTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAAT
CATGCAAAATTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGCGATGGTTAGT
Done.