Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017567.1 Corchorus olitorius cultivar O-4 contig17600, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165815

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
174--356
84
2.1
85
91
3
296
20
5
46
27
1.73
15313--15362
26
1.9
26
83
0
64
58
2
18
22
1.49
15468--15501
16
2.1
16
100
0
68
29
11
14
44
1.81
16418--16472
21
2.8
19
78
10
65
34
20
7
38
1.80
16426--16472
19
2.3
20
85
7
60
34
21
8
36
1.84
17064--17088
13
1.9
13
100
0
50
48
16
8
28
1.74
18371--18428
19
2.9
19
87
5
80
36
12
22
29
1.90
19231--19275
6
7.7
6
95
2
74
2
17
13
66
1.34
21136--21167
4
8.5
4
86
13
50
78
0
21
0
0.76
28132--28160
6
4.8
6
100
0
58
0
51
31
17
1.45
28208--28592
133
2.9
132
93
1
635
31
18
16
32
1.94
39392--39416
11
2.3
11
100
0
50
32
8
0
60
1.26
41366--41411
22
2.1
22
95
0
83
39
26
23
10
1.88
63664--63690
4
6.8
4
100
0
54
22
0
0
77
0.76
69488--69545
19
2.9
19
75
9
62
41
10
17
31
1.83
69488--69545
21
2.9
20
79
5
64
41
10
17
31
1.83
69691--69748
19
2.9
20
79
5
73
27
22
10
39
1.86
75499--75540
15
3.1
15
74
25
56
33
19
19
28
1.96
78379--78434
29
1.9
29
85
0
76
41
16
25
17
1.89
84903--84933
3
10.3
3
100
0
62
0
0
35
64
0.94
88382--88440
18
3.3
18
64
17
50
42
8
18
30
1.80
88333--88452
36
3.4
36
95
3
210
38
7
19
35
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94225--94262
2
19.0
2
100
0
76
50
0
0
50
1.00
106099--106128
12
2.4
13
88
11
53
0
13
13
73
1.10
107806--107830
13
1.9
13
100
0
50
12
16
0
72
1.13
108246--108275
2
15.0
2
100
0
60
50
0
0
50
1.00
114008--114114
39
2.7
41
79
4
128
25
17
12
44
1.83
118484--118678
97
2.0
97
92
0
327
36
21
13
28
1.91
129813--130059
122
2.0
122
100
0
494
27
19
14
38
1.91
148703--148744
20
2.2
19
87
12
59
54
11
4
28
1.57
148906--148956
21
2.5
20
79
14
68
33
19
7
39
1.81
150484--150538
23
2.3
24
88
11
87
41
5
0
52
1.24
150480--150544
32
2.0
32
85
5
87
41
6
0
52
1.26
153133--153174
12
3.5
12
83
6
50
0
30
0
69
0.89

Tables:   1

The End!