Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017570.1 Corchorus olitorius cultivar O-4 contig17603, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101307

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2679
333
8.1
330
85
4
3205
33
16
15
34
1.91
1--2679
665
4.0
662
85
3
3315
33
16
15
34
1.91
2853--3463
333
1.8
334
81
3
775
34
13
14
37
1.86
3484--4971
330
4.5
329
79
7
1477
32
14
16
37
1.89
5508--5553
24
1.9
24
90
0
74
26
4
10
58
1.50
7501--7530
2
15.0
2
92
0
51
46
0
3
50
1.18
8068--8096
2
14.5
2
100
0
58
48
0
0
51
1.00
14996--15034
21
1.9
20
84
5
51
48
0
30
20
1.50
27517--27558
20
2.1
20
100
0
84
42
4
19
33
1.72
34278--34381
53
2.0
52
92
1
172
16
22
27
33
1.95
43118--43185
35
1.9
35
96
0
127
48
2
10
38
1.52
44442--44494
20
2.5
21
82
14
56
3
26
1
67
1.17
44442--44485
23
2.0
23
90
4
72
4
25
2
68
1.20
76032--76057
7
3.7
7
100
0
52
42
11
15
30
1.82
76302--76378
29
2.6
28
83
4
82
44
9
24
22
1.81
85245--85274
11
2.7
11
94
0
51
43
6
10
40
1.64

Tables:   1

The End!