Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017575.1 Corchorus olitorius cultivar O-4 contig17608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51247

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1778
311
5.6
318
77
9
1541
33
13
16
36
1.88
2--1759
630
2.8
620
77
10
1560
33
13
16
36
1.88
2298--3779
320
4.7
321
79
7
1437
32
14
16
36
1.89
12653--12682
14
2.1
14
100
0
60
23
6
26
43
1.78
18231--18272
20
2.1
20
100
0
84
33
38
0
28
1.58
28833--28914
40
2.0
40
97
0
155
34
12
8
45
1.72
31453--31530
26
3.0
26
92
0
129
29
12
34
23
1.92
36940--36987
23
2.1
23
100
0
96
22
12
4
60
1.49
36934--36990
23
2.3
26
79
20
84
28
15
3
52
1.59
40160--40236
40
1.9
40
100
0
154
41
15
10
32
1.81

Tables:   1

The End!