Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017576.1 Corchorus olitorius cultivar O-4 contig17609, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 56161
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:552 original size:24 final size:24

Alignment explanation


    Indices: 500--558  Score: 75
    Period size: 24  Copynumber: 2.5  Consensus size: 24

        490 ATGGGTTGAC

                           *  *     
        500 TATGATCATGATCACGACCATGAT
          1 TATGATCATGATCACAACAATGAT

                             *      
        524 TATGATCATGATCACAATAAT-AT
          1 TATGATCATGATCACAACAATGAT

                        
        547 TAATGATCATGA
          1 T-ATGATCATGA

        559 AGATAATCAC


Statistics
Matches: 31,  Mismatches: 3, Indels: 2
        0.86            0.08        0.06

Matches are distributed among these distances:
  23    3  0.10
  24   28  0.90

ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32


Consensus pattern (24 bp):   
TATGATCATGATCACAACAATGAT

Found at i:56136 original size:2 final size:2

Alignment explanation


    Indices: 56129--56154  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

      56119 CGATGAATCC

                                                  
      56129 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

      56155 GATGGGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.