Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017579.1 Corchorus olitorius cultivar O-4 contig17612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5140
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.36
Found at i:1601 original size:322 final size:319
Alignment explanation
Indices: 18--2345 Score: 2592
Period size: 322 Copynumber: 7.2 Consensus size: 319
8 ATAAGTTCTG
* * *
18 AAAATGGAAAAACGATATTGGAAGCGTGAAAACCCCTGCAATTATTTATGGCGTTGAATTATATA
1 AAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATT-TTTTTGGCGTTGAATTATATA
* * * *
83 TTTTGTAGAGTTGTGTGGCAAAAAAATGAGAAGAAAGTTTTCGGGTCAACTTTTAGTCGAAATCG
65 TTTTTTAGAGTTGTGTGGC-AAAAAATGAGAAAAAAGTTTTCGGGTCAATTTTTAGCCGAAATCG
*
148 TGTACTAACCATCACGG-TTTTGACTAAAAACGCGTTTCGGGGCCCTGGCTCAGTTTTGCATGAT
129 TGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCC-GGCTCAGTTTTGCATGAT
* * *
212 TTTTGGCAGAAAGACTCCTTGAAATATCTATTTTCATATAATCAAATCTCAGCTAATTTGGATTT
193 TTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCCAATTTGGATTT
* * * * *
277 AAGGAATTCTTTTTACGAGCATCTTAATTTTGTTTCGATTTAATCAGGAATAAATTCGTAAA
258 AAGGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAA
* * * * * * * * *
339 AGAATTAGAAAAACAATATTCGAAGCGTGAATAACCCTTAAATTCTTTTGGCGTTCAATAATATA
1 A-AAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATA
* *
404 TTTTTTTAGAGTTGTGTGGCAAAAAAATGATAAATAAAGTTTTCGGGTGAATTTTTAGCCGAAAT
65 -TTTTTTAGAGTTGTGTGGC-AAAAAATGAGAAA-AAAGTTTTCGGGTCAATTTTTAGCCGAAAT
* * *
469 CGTGTA-TAAACCATCACGGTTTTTTTTTGCTAAAAACGAGTTTCGGGGCCCCGGTTCAGTTTTG
127 CGTGTACT-AACCATCACGG---TTTTTGGCTAAAAACGCGTTTCGGGG-CCCGGCTCAGTTTTG
* *
533 CATGATTTTTGGTAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCTAATTT
187 CATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCCAATTT
*
598 GGATTTAAAGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCAG
252 GGATTTAAGGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTC-G
*
663 CAAAAA
316 --GAAA
* *
669 AAAATGGAAAAACTATATTGGAAGCGTGAAAACCCCTTCAATTTTCTTTGGCGTTGAATTATATA
1 AAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTT-TTTGGCGTTGAATTATATA
* * * *
734 TTTTTTTGGAGTTGTGGGGCAAAAAAATGAGAAAAATGTTTTCGGGTCAATTTTTATCCGAAATC
65 -TTTTTTAGAGTTGTGTGGC-AAAAAATGAGAAAAAAGTTTTCGGGTCAATTTTTAGCCGAAATC
* * * * * * * ** * * *
799 GTATACTAACCATCATGGTTTTTGACTAAAAACGCATTCCAGAGACCTTGCTAAATTTTGCTTGA
128 GTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-GGGGCCCGGCTCAGTTTTGCATGA
* ** * * *
864 TTTTTGGCAGAAAGTCTGATTAAAATATCTATATTCATATAACCAGATCTCTGCCAATTTGGATT
192 TTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCCAATTTGGATT
* * *
929 TAAGGATTTCTTTTTACCAGCATCTAAATTTTGTTTTGATTTAATTAGAAATAAATTCGGAAA
257 TAAGGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAA
* * *
992 AAAATGGAAAAACGATATTGTAAGCGTGAAAACCCCTTCAATTTTCTTTGGTGTTGAATTATATA
1 AAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTT-TTTGGCGTTGAATTATATA
* ** * * *
1057 GTTTTTTAGAGTTGCGTGG-AAAAAAAAAGAGAAAA-TTTTCGCGTCAATTTTTATCCGAAATCG
65 -TTTTTTAGAGTTGTGTGGCAAAAAATGAGAAAAAAGTTTTCGGGTCAATTTTTAGCCGAAATCG
* * * ** * *
1120 TG---T-ACCATCATGGTTTTTGGTTAAAAACGCGTTCCGGATCCCCTGCTCAATTTTGCATGAT
129 TGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGG-GGCCCGGCTCAGTTTTGCATGAT
* * *
1181 TTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATATAACCAAATCTCGGCTAATTTGGA-TT
193 TTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCCAATTTGGATTT
* * * *
1245 ATAGGATTTGTTTTTACGAGCATTTGAATTTTGTTTCTATTTAATT-GAAAATAAAGTCGGAAA
258 A-AGGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAG-AAATAAATTCGGAAA
* * *
1308 AAAATCGAAAAACGATATTGGAAGCGTGAAAAAACCCTTCAATTTTTTTGCCTTTGAATTATATA
1 AAAATGGAAAAACGATATTGGAAGCGTG-AAAAACCCTTCAATTTTTTTGGCGTTGAATTATATA
* * * ** ** * *
1373 TTTTTTCAGAGTAGTATGGCAAAAATTGAGAAAAAAAATTTCATGTCAACTTTTAGCAGAAATCG
65 TTTTTT-AGAGTTGTGTGGCAAAAAATGAGAAAAAAGTTTTCGGGTCAATTTTTAGCCGAAATCG
1438 TGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTTCGGGGCCCGGCTCAGTTTTGCATGAT
129 TGTACTAACCATCACGG-TTTTTGGCTAAAAACGCGTTTCGGGGCCCGGCTCAGTTTTGCATGAT
** *
1503 TTTTTACAGAAAGACTCCTTGAAATATATATATTCATATAACCAAATCTCAGCCAATTTGGATTT
193 TTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCCAATTTGGATTT
* * * *
1568 AA-GATTTCATTTTACGAGCATCTAAATTTT-TGTTCAGATTTAATTAAAAATAAATTCAGAAAA
258 AAGGATTTCTTTTTACGAGCATCTGAATTTTGT-TTC-GATTTAATTAGAAATAAATTC-G-GAA
1631 A
319 A
* * *
1632 AAAATGAAAAAAAGATATTGGAAGCGTGAAAACCCCTTCAATTTTTCTTGGCGTTGAATTATATA
1 AAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTTT-TTGGCGTTGAATTATATA
* * * *
1697 ATTTGTAGAGTTGTGTGGCAAGAAGAATGAGAAGAAAGTTTTCGGGTCAACTTTTAGCCGAAATC
65 TTTTTTAGAGTTGTGTGGCAA-AA-AATGAGAAAAAAGTTTTCGGGTCAATTTTTAGCCGAAATC
** * *
1762 GTGTACTAACCATCACGGTTTTTGGCTAAAAACGCG-TTCTGAAGCCCTGGTTCCGTTTTGCATG
128 GTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-GGGGCCC-GGCTCAGTTTTGCATG
* *
1826 CTTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACA-TTGGA
191 ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCCA-ATTTGGA
* * * * * * * *
1890 TATAAGGATTTGTTTTTATGAGCTTCTGAATCTTGTTACGATTTAATTATAAATTAATTCGGAAA
255 TTTAAGGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGG--A
1955 AA
318 AA
* * * * * * ** * *
1957 AAAATTGAAAAATGATATTAGAAGCGTG-AAAACCCTTTAATCTTGTTGGTATTTAATTCTATAT
1 AAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATA-
* ** * ** *
2021 TTTTTCTA-AGTAT-TTTGGCAAAACGTTGAGAAAAAACTTTTCAAGTCAGTTTTTAGCCGAAAT
65 TTTTT-TAGAGT-TGTGTGGCAAAA-AATGAGAAAAAAGTTTTCGGGTCAATTTTTAGCCGAAAT
* * * * * *
2084 CGTGTACTAACCATCAC-ATTTTTGGCTAAAAACGCGATTCAGGGCCCCGACTCTGTTTTTCATG
127 CGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-GGGGCCCGGCTCAGTTTTGCATG
* * * * * * *
2148 GTTTTTGGCAAAAAGAATCCTTGAAATATCTATAATCATCTAAACAAATCTCAGCCACA-TAGGA
191 ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCCA-ATTTGGA
* **
2212 TTTAAGGATTT-TATTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTTTGAA
255 TTTAAGGATTTCT-TTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAA
2276 A
319 A
** * * * * * * * *
2277 AGGA-GGGATAACGATATTAGAAGCGTGAAAAACGCTTAAACTTTTGTGGCATTGAATTATATAT
1 AAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATAT
2341 TTTTT
66 TTTTT
2346 CTGAGTATTG
Statistics
Matches: 1707, Mismatches: 251, Indels: 101
0.83 0.12 0.05
Matches are distributed among these distances:
315 11 0.01
316 204 0.12
317 29 0.02
318 25 0.01
319 24 0.01
320 60 0.04
321 59 0.03
322 307 0.18
323 254 0.15
324 100 0.06
325 176 0.10
326 167 0.10
327 156 0.09
328 4 0.00
329 78 0.05
330 53 0.03
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (319 bp):
AAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATAT
TTTTTAGAGTTGTGTGGCAAAAAATGAGAAAAAAGTTTTCGGGTCAATTTTTAGCCGAAATCGTG
TACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCGGCTCAGTTTTGCATGATTTT
TGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCCAATTTGGATTTAAG
GATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCGGAAA
Found at i:3118 original size:322 final size:317
Alignment explanation
Indices: 2392--3318 Score: 1068
Period size: 322 Copynumber: 2.9 Consensus size: 317
2382 TCGGTTCGGT
2392 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCT
1 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCT
* * *
2457 AATTTGGACTTAAGGATTTCTTTTTACGAGCATCTGAATTTAGTTTCAATT-TAATTACAAATAA
66 AATTTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATAT-GTTTCAATTAT-ATTAAAAATAA
* * * *
2521 ATTCGGGAAAAAAATGGAAAAATGGTATTGGAAGCGTGAAAACCCCCTTCAACTTTTTTTGGCGT
129 ATTC-GGAAAAAAATGGAAAAACGATATTGGAAGCGTGAAAA-ACCCTTCAA-TTTTTTTGGCAT
* *
2586 TGAAATATATATATTTTTAGAGTTGTGTGGCAAAAAAATGAG-AAAAAAGTTTTCAGGACAATTT
191 TGAATTATATAT-TTTTTAGAGTTGTGTGGC-AAAAAATGAGAAAAAAAGTTTTC-GGTCAATTT
* * **
2650 TTATCCGAAATCGTGTA-ATAACTATCATGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCTTGCT
253 TTATCCGAAATCGTGTACGT---TA-CATGGTTTTCGGCTAAAAACGCGTTTCGGAGCCCAGGCT
2714 AAAG
314 AAAG
** * * * * * * *
2718 -TTTGCATGATTTTTTACAGAAAGTCTCATTAAAATGTCTTTAGTCATAGAACCAAATCTCAGCT
1 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCT
* * * *
2782 GATTTAGG-TTTAAGGATTTGTGTTTACGAGCATTTGAATCATGTTTCAATTATATTAAAAATAA
66 AATTT-GGATTTAAGGATTTCTTTTTACGAGCATCTGAAT-ATGTTTCAATTATATTAAAAATAA
* * * *
2846 ATTCGAAAAAAAATCGAAAAACGATATTGGAAGCTTGAAAAACCCTTCAATTTTTTCTGGCTTTG
129 ATTCGGAAAAAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTTTT-TGGCATTG
2911 AATTATATATTTTTTCAGA-TTAGTGTGGCAAAAAATGAGAAAAAAAAAGTTTTCGTGTCAATTT
193 AATTATATATTTTTT-AGAGTT-GTGTGGCAAAAAATGAG--AAAAAAAGTTTTCG-GTCAATTT
* * *
2975 TTAGCAGAAATCGTGTACGTTACATGGTTTTCGGCTAAAAACGCGTTTCGGAGCCCAGGCT-TAG
253 TTATCCGAAATCGTGTACGTTACATGGTTTTCGGCTAAAAACGCGTTTCGGAGCCCAGGCTAAAG
*
3039 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATATAA-CAACATCTCAGC
1 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAA-ATCTCAGC
* * * * * * *
3103 CAATTTGGATTTAAGGATATCTTTTTACAAGTATCTAAATTTTAT-TTTGATTTA-ATTACAAAA
65 TAATTTGGATTTAAGGATTTCTTTTTACGAGCATCTGAA---TATGTTTCAATTATATTA-AAAA
* * * *
3166 -AAATTTGGAAAACAATGGATAAACGATATTGCAAGCGTGAAAAACCCTTCAATTTTTTTTGGCA
126 TAAATTCGGAAAAAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAA-TTTTTTTGGCA
* * * *
3230 TTGAATTATAAATTTCTTAAGAGGTGTGTGGCAAAAAATTGAGAAAAAAA-TTTTCGGGTCGATT
190 TTGAATTATATATTT-TTTAGAGTTGTGTGGCAAAAAA-TGAGAAAAAAAGTTTTC-GGTCAATT
3294 TTTATCCGAAATCGTGTACGTTACA
252 TTTATCCGAAATCGTGTACGTTACA
3319 GTCCCGGCTC
Statistics
Matches: 511, Mismatches: 67, Indels: 52
0.81 0.11 0.08
Matches are distributed among these distances:
320 34 0.07
321 15 0.03
322 218 0.43
323 60 0.12
324 35 0.07
325 144 0.28
326 5 0.01
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (317 bp):
TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACCAAATCTCAGCT
AATTTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATATGTTTCAATTATATTAAAAATAAAT
TCGGAAAAAAATGGAAAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTTTTTGGCATTGAAT
TATATATTTTTTAGAGTTGTGTGGCAAAAAATGAGAAAAAAAGTTTTCGGTCAATTTTTATCCGA
AATCGTGTACGTTACATGGTTTTCGGCTAAAAACGCGTTTCGGAGCCCAGGCTAAAG
Found at i:4024 original size:318 final size:322
Alignment explanation
Indices: 3325--4149 Score: 1061
Period size: 318 Copynumber: 2.6 Consensus size: 322
3315 TACAGTCCCG
* * **
3325 GCTCAATTTTGCATGATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATAGAATTAAATC
1 GCTCAATTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACAAAATC
* * *
3390 TCAGCTAATTTGTATTTAAGAATTTCTTTTTACGAGCATCTAAATTTTGTTACGATTTAATTAGA
66 TCAGCTAATTTGGATTTAAGGATTTCTTTTTACGAGCATCTAAATTTTGTTTCGATTTAATTAGA
* *
3455 AA-AAATTCGG-AAAAAATGGAAAAACGATATTGGAAGCGTG---A---TCAATTTTCTTTGGCT
131 AATAAATTCGGAAAAAAATGGAAAAACGATATTGGAAGCGTGAAAACCTTCAATTTTTTTTGGCG
* * * * * *
3512 TTGAATTATATATTTTTTTAGAGTTGTGTCGCAAAGAAAATGAGAAAAAAAGTTTCCGGGTCAAT
196 ATGAAGTATATATTTCTTTAGAGTTGTGTCGCAAAAAAAAAGAGAAAAAAAGTTTCCGCGTCAAT
* *
3577 TTTTATCTGAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCATTCCGAAGCCCTT
261 TTTTATCTGAAATCGTGTACT-ACTATCACGATTTTTGGCTAAAAACGCATTCCGAAGCCCTA
* * * * * *
3640 GCTAAATTTTGCATGATTTTTGGCAGAATGTCTCATTAAAATATCTATATTCATATAACCAAATC
1 GCTCAATTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACAAAATC
* * * *
3705 TCAACCAATTTGGATTTAAGGATTTCTTTTTACAAGCATCAAAATTTTGTTTCGATTTAATTAGA
66 TCAGCTAATTTGGATTTAAGGATTTCTTTTTACGAGCATCTAAATTTTGTTTCGATTTAATTAGA
*
3770 AATAAATTCGGAAAAAAATGGAAAAACGATATTGCAAGCGTGAAAATCCCTTCAATTTTTTTTGG
131 AATAAATTCGGAAAAAAATGGAAAAACGATATTGGAAGCGTGAAAA--CCTTCAATTTTTTTTGG
* * * *
3835 GGATGAAGTATATATTTCTTTAGAGTTGTGT-GGAAAAAAAAAGAG-AACAAAGTTTTCGCGTCA
194 CGATGAAGTATATATTTCTTTAGAGTTGTGTCGCAAAAAAAAAGAGAAAAAAAGTTTCCGCGTCA
* * *
3898 ATTTTTATCTGAAATCGTGTA-T-CT-TCACGATTTTTTGTTAAAAACGCGTTCC-AGAG-CCTA
259 ATTTTTATCTGAAATCGTGTACTACTATCACGATTTTTGGCTAAAAACGCATTCCGA-AGCCCTA
* *
3958 GCTCAATTTCGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTATATAACAAAATC
1 GCTCAATTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACAAAATC
* * * * * * *
4023 TCGGCTAATTTGGATTTAAGGATTTGTTTTTACGAGCATTTGAATCTAGTTTCGAATTAATT-GA
66 TCAGCTAATTTGGATTTAAGGATTTCTTTTTACGAGCATCTAAATTTTGTTTCGATTTAATTAG-
* *
4087 AAATAAATTCGGAAAAAAATCGAAAAACGATATTGGAAGCATGAAAAACCTTTCAATTTTTTT
130 AAATAAATTCGGAAAAAAATGGAAAAACGATATTGGAAGCGTG-AAAACC-TTCAATTTTTTT
4150 GCCTTTGAAT
Statistics
Matches: 440, Mismatches: 56, Indels: 25
0.84 0.11 0.05
Matches are distributed among these distances:
315 116 0.26
316 8 0.02
317 32 0.07
318 164 0.37
319 30 0.07
320 3 0.01
322 1 0.00
323 36 0.08
324 11 0.03
325 39 0.09
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (322 bp):
GCTCAATTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATATAACAAAATC
TCAGCTAATTTGGATTTAAGGATTTCTTTTTACGAGCATCTAAATTTTGTTTCGATTTAATTAGA
AATAAATTCGGAAAAAAATGGAAAAACGATATTGGAAGCGTGAAAACCTTCAATTTTTTTTGGCG
ATGAAGTATATATTTCTTTAGAGTTGTGTCGCAAAAAAAAAGAGAAAAAAAGTTTCCGCGTCAAT
TTTTATCTGAAATCGTGTACTACTATCACGATTTTTGGCTAAAAACGCATTCCGAAGCCCTA
Found at i:5067 original size:326 final size:321
Alignment explanation
Indices: 4240--5105 Score: 1173
Period size: 325 Copynumber: 2.7 Consensus size: 321
4230 GTGTACTAAA
* * * *
4240 TCTCAGCGAATTTGGATTTAAGGATTTGTTTTTACGAGCATCTTAATTTTGTTTCGATTTAATAA
1 TCTCAGCCAATTTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTA
* * * * * *
4305 GGAATAAATTCGGAAAAGAATTAGAAAAACAATATTCAAAGCGTGAATAACCCTTAATTTTTTTT
66 GAAATAAATTCGGAAAAAAATTGGAAAAACGATATTCGAAGCGTGAA-AACCCTTAA--ATTTTT
* *
4370 TGGCGTTCAATAATATATTTTTTTAGAGTTGTGTGGCAAAAAAATGAGAAAAAAAGTTTTCGGGT
128 TGGCGTTGAATTATATATTTTTTTAGAGTTGTGTGGCAAAAAAATGAG-AAAAAAGTTTTCGGGT
* * * *
4435 GAATTTTTAGCCGAAATCGTGTAGAAACCAACACGGTTTTTTGCTAAAAACGCGTTTCGGGGCCC
192 CAATTTTTAGCCGAAATCGTGTACAAACCAACACGGTTTTTTGCTAAAAACGCGTTTCAGAGCCC
*
4500 CGGCTCAGTTTTGCAATATTTTTAGCAGAAAGACTCCTTGAAATATCAATATTCATATAACCAAT
257 CGACTCAGTTTTGCAATATTTTTAGCAGAAAGACTCCTTGAAATATCAATATTCATATAACCAAT
* * * *
4565 TCTCATCCAGTTTGGATTTAAGGATTTC-TTTTAAGAGCATCTGAATTTTGTTTCGATTTTATTA
1 TCTCAGCCAATTTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTA
* * * * * *
4629 GAATTAAATGT-GGAAAAAAAATGGAAAAACGATTTTGGAAGCGTAAAAACCCCTTCAATTGTCT
66 GAAATAAAT-TCGGAAAAAAATTGGAAAAACGATATTCGAAGCGTGAAAA-CCCTTAAATT-T-T
* *
4693 TTGACATTGAATTATATATTTTTTTAGAGTTGTGTGGCAAAAAAATGAGAAAAAAGTTTTCGGGT
127 TTGGCGTTGAATTATATATTTTTTTAGAGTTGTGTGGCAAAAAAATGAGAAAAAAGTTTTCGGGT
* * *
4758 CAATTTTTATCCGAAATCGTGTACAAACCATCACGGTTTTCTTTGCTAAAAAGGCGTTTCAGAGC
192 CAATTTTTAGCCGAAATCGTGTACAAACCAACACGG-TTT-TTTGCTAAAAACGCGTTTCAGAGC
* * * * *
4823 CTCGATTCAGTTTTGC-ATGATTTTTGGTAGAAAGACTCCTTGAAATATCAATATTCATCTAACC
255 CCCGACTCAGTTTTGCAAT-ATTTTTAGCAGAAAGACTCCTTGAAATATCAATATTCATATAACC
4887 AAT
319 AAT
* * **
4890 TCTCAGCCAATTTGGATTTAAGGATTTCTTTTTACGAGAATCTGAATTTTGCTTCGATTGGATTA
1 TCTCAGCCAATTTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTA
*
4955 GAAATAAATTCGGAAAAAAATTGGAAAAACGCTATTCGAAGCGTGAAAACCCATTAAATTTTTCA
66 GAAATAAATTCGGAAAAAAATTGGAAAAACGATATTCGAAGCGTGAAAACCC-TTAAATTTTT--
*
5020 TGGTGTTGAATTATATATTTTTTTAGAGTTGTGTGGCAAAAAAATGAG-AAAAAGTTTTCGGGTC
128 TGGCGTTGAATTATATATTTTTTTAGAGTTGTGTGGCAAAAAAATGAGAAAAAAGTTTTCGGGTC
* *
5084 AATTTTTAGCAGAAACCGTGTA
193 AATTTTTAGCCGAAATCGTGTA
5106 TTAACTATCA
Statistics
Matches: 472, Mismatches: 57, Indels: 24
0.85 0.10 0.04
Matches are distributed among these distances:
322 2 0.00
323 51 0.11
324 126 0.27
325 170 0.36
326 123 0.26
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.35
Consensus pattern (321 bp):
TCTCAGCCAATTTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTA
GAAATAAATTCGGAAAAAAATTGGAAAAACGATATTCGAAGCGTGAAAACCCTTAAATTTTTTGG
CGTTGAATTATATATTTTTTTAGAGTTGTGTGGCAAAAAAATGAGAAAAAAGTTTTCGGGTCAAT
TTTTAGCCGAAATCGTGTACAAACCAACACGGTTTTTTGCTAAAAACGCGTTTCAGAGCCCCGAC
TCAGTTTTGCAATATTTTTAGCAGAAAGACTCCTTGAAATATCAATATTCATATAACCAAT
Done.