Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017580.1 Corchorus olitorius cultivar O-4 contig17613, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42420

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--1251
325
3.9
323
86
4
1665
33
13
16
35
1.89
2087--2127
19
2.2
19
100
0
82
17
19
24
39
1.92
3452--3485
17
2.1
17
88
5
52
55
17
11
14
1.68
11145--11176
3
10.7
3
93
0
55
0
34
3
62
1.11
15035--15080
18
2.5
17
83
13
56
80
15
4
0
0.86
21628--21667
2
20.0
2
100
0
80
0
50
0
50
1.00
30554--30590
7
5.3
7
100
0
74
13
45
13
27
1.81
31278--31332
27
2.1
27
83
10
69
52
25
7
14
1.67
33820--34657
294
3.0
280
84
5
1071
29
19
22
28
1.98
34701--34727
3
9.0
3
100
0
54
0
33
0
66
0.92
34791--34822
15
2.1
15
100
0
64
31
34
12
21
1.91
34832--34875
21
2.1
21
100
0
88
45
0
22
31
1.53
35168--35273
53
2.0
53
87
7
153
31
9
15
44
1.78
35321--35370
18
2.9
17
85
8
75
50
12
10
28
1.71
35618--35676
29
2.0
29
100
0
118
33
3
15
47
1.62

Tables:   1

The End!