Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017583.1 Corchorus olitorius cultivar O-4 contig17616, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46069

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82--384
156
1.9
155
88
3
457
38
17
9
33
1.83
1349--1386
20
1.9
20
94
0
67
28
31
13
26
1.93
1371--1486
25
5.0
25
76
16
131
37
29
11
22
1.89
1407--1621
42
5.0
42
79
9
211
34
30
11
23
1.90
1509--1985
26
18.7
26
91
3
765
33
28
12
25
1.92
1509--1985
51
9.4
51
91
2
780
33
28
12
25
1.92
1509--1985
77
6.2
77
91
2
782
33
28
12
25
1.92
5613--5650
19
2.0
19
100
0
76
42
26
21
10
1.85
6705--6743
19
2.1
19
100
0
78
5
5
23
66
1.32
6996--7033
2
19.0
2
100
0
76
50
0
0
50
1.00
14413--14494
31
2.6
31
88
0
128
25
20
19
34
1.96
16412--16458
19
2.5
19
100
0
94
40
14
17
27
1.89
16537--16573
19
1.9
19
94
0
65
40
13
29
16
1.86
18918--18975
19
2.9
19
82
5
71
29
20
12
37
1.89
20992--21034
3
14.3
3
100
0
86
32
0
0
67
0.91
26293--26328
19
1.9
18
88
5
54
0
19
11
69
1.18
27315--27339
13
1.9
13
100
0
50
0
24
16
60
1.36
39097--39121
2
12.5
2
100
0
50
52
48
0
0
1.00

Tables:   1

The End!