Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017588.1 Corchorus olitorius cultivar O-4 contig17621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20839

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3416--3442
9
3.0
9
100
0
54
77
22
0
0
0.76
6766--6859
39
2.4
39
87
3
127
35
6
24
34
1.81
8315--8412
28
3.5
27
81
12
99
41
24
16
17
1.89
13018--13058
2
21.0
2
80
14
50
46
4
0
48
1.23
13153--13315
79
2.1
79
89
1
256
34
12
1
51
1.48
14939--14968
2
15.0
2
100
0
60
50
0
0
50
1.00
17169--17247
40
2.0
41
89
2
124
46
2
16
34
1.60
17802--17853
15
3.6
14
82
17
63
46
0
9
44
1.36
17816--17849
12
2.8
12
87
12
52
50
0
5
44
1.26
20795--20839
2
22.5
2
100
0
90
51
0
0
48
1.00

Tables:   1

The End!