Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017592.1 Corchorus olitorius cultivar O-4 contig17625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21231

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1485--1518
17
2.0
17
88
11
52
38
0
5
55
1.24
3330--3369
18
2.2
18
100
0
80
20
12
10
57
1.63
4659--4805
21
6.9
22
73
10
117
42
7
12
38
1.71
7711--7857
77
1.9
79
87
4
208
36
3
23
36
1.72
9280--9522
22
11.1
22
74
4
159
38
16
11
33
1.84
9558--9627
22
3.2
22
81
0
68
38
20
7
34
1.80
9654--9883
22
10.5
22
74
8
166
34
13
9
41
1.78
9654--9794
64
2.2
64
79
5
149
34
12
9
43
1.75
10009--10044
8
4.5
8
100
0
72
22
38
0
38
1.54
10855--10918
29
2.2
30
88
2
94
26
10
28
34
1.90
10956--10998
20
2.2
20
87
8
61
62
9
4
23
1.44
11164--11233
29
2.3
30
85
4
88
24
12
25
37
1.91
12713--12742
8
3.9
8
95
4
53
50
10
0
40
1.36
13637--13662
13
2.0
13
100
0
52
69
0
0
30
0.89
14940--14998
31
1.9
31
82
6
75
11
18
37
32
1.87
15180--15220
21
1.9
22
85
5
57
9
14
29
46
1.77

Tables:   1

The End!