Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017594.1 Corchorus olitorius cultivar O-4 contig17627, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44424

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4063--4357
69
4.3
69
89
0
412
26
24
18
30
1.98
5396--5429
17
2.0
17
94
0
59
26
23
26
23
2.00
7219--7275
25
2.2
26
90
6
98
42
19
17
21
1.90
15523--15779
136
1.9
136
97
0
487
42
14
19
24
1.88
25697--25738
14
3.1
13
90
10
66
42
7
16
33
1.75
27960--28290
67
5.0
67
87
4
463
38
13
22
25
1.91
28236--28342
55
1.9
55
84
3
144
31
14
26
27
1.95
28323--28670
64
5.4
64
86
2
439
34
16
22
26
1.95
28310--28670
192
1.9
192
87
1
535
34
16
22
26
1.95
28900--29143
51
4.8
51
87
2
332
34
12
29
24
1.91
28900--29143
101
2.4
101
88
1
346
34
12
29
24
1.91
29366--29443
30
2.7
30
84
5
99
21
14
24
39
1.90
36352--36393
15
2.8
15
85
0
57
78
0
16
4
0.91
36557--36845
67
4.3
66
89
4
395
23
19
16
40
1.91
36557--37052
134
3.7
130
79
9
463
24
19
17
38
1.92
38755--39111
181
2.0
181
94
0
624
33
12
5
47
1.66
42563--42589
13
2.1
13
100
0
54
55
7
7
29
1.55

Tables:   1

The End!