Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017597.1 Corchorus olitorius cultivar O-4 contig17630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64724

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
204--261
29
2.0
30
86
3
82
36
10
20
32
1.87
6426--6469
2
22.0
2
90
9
72
47
2
0
50
1.13
8148--8242
2
47.5
2
97
0
181
49
49
0
1
1.07
8242--8266
2
12.5
2
100
0
50
52
0
0
48
1.00
8247--8465
109
2.0
109
100
0
438
43
9
11
35
1.73
13187--13222
16
2.2
17
90
5
56
8
30
0
61
1.26
13186--13228
16
2.6
17
82
14
54
6
30
0
62
1.21
20582--20616
18
1.9
18
100
0
70
45
22
2
28
1.67
22680--22789
53
2.1
53
98
0
211
50
18
7
23
1.71
27933--27976
21
2.3
19
84
11
54
34
34
11
20
1.88
42783--42873
43
2.1
43
100
0
182
40
19
16
23
1.91
46606--46641
17
2.1
17
89
0
54
38
22
8
30
1.83
48411--48479
18
3.8
18
80
0
75
26
24
30
18
1.98
51249--51284
17
2.1
17
89
0
54
30
11
19
38
1.86
53469--53535
21
3.2
21
64
16
57
50
14
5
28
1.66
53456--53536
42
1.9
42
97
0
153
46
16
7
29
1.73
53602--53707
56
1.9
56
86
1
151
42
4
20
32
1.73
54601--54658
10
5.3
11
78
15
50
70
1
0
27
0.97
54610--54658
17
2.8
17
80
14
55
71
2
0
26
0.97
55011--55043
14
2.4
14
90
10
50
9
21
12
57
1.62
61223--61247
6
4.2
6
100
0
50
48
36
0
16
1.46
61574--61608
18
1.9
18
100
0
70
51
37
0
11
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61768--61793
3
8.7
3
100
0
52
69
0
0
30
0.89
64374--64443
36
1.9
36
91
0
113
21
10
8
60
1.55

Tables:   1

The End!