Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017598.1 Corchorus olitorius cultivar O-4 contig17631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3562
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33


Found at i:3513 original size:51 final size:51

Alignment explanation


    Indices: 3457--3560  Score: 208
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       3447 ACTAACCCTT

                                                               
       3457 ATATATACTATATATTATTTTTAGTGACAATGGAAATTACTTAAAGGCCAA
          1 ATATATACTATATATTATTTTTAGTGACAATGGAAATTACTTAAAGGCCAA

                                                               
       3508 ATATATACTATATATTATTTTTAGTGACAATGGAAATTACTTAAAGGCCAA
          1 ATATATACTATATATTATTTTTAGTGACAATGGAAATTACTTAAAGGCCAA

              
       3559 AT
          1 AT

       3561 TG


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  51   53  1.00

ACGTcount: A:0.41, C:0.10, G:0.12, T:0.38


Consensus pattern (51 bp):   
ATATATACTATATATTATTTTTAGTGACAATGGAAATTACTTAAAGGCCAA
Done.