Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000176.1 Corchorus olitorius cultivar O-4 contig00176, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4765
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.34


Found at i:2768 original size:2 final size:2

Alignment explanation


    Indices: 2761--2845  Score: 154
    Period size: 2  Copynumber: 43.0  Consensus size: 2

       2751 CATCTCTTCC

                         *                                                
       2761 CT CT CT CT CG C- CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                                                                          
       2802 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

              
       2844 CT
          1 CT

       2846 TTTGCCCAAA


Statistics
Matches: 81,  Mismatches: 1, Indels: 2
        0.96            0.01        0.02

Matches are distributed among these distances:
   1    1  0.01
   2   80  0.99

ACGTcount: A:0.00, C:0.51, G:0.01, T:0.48


Consensus pattern (2 bp):   
CT

Done.