Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017602.1 Corchorus olitorius cultivar O-4 contig17635, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15173

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4620--4644
12
2.1
12
100
0
50
24
32
28
16
1.96
5663--5770
35
3.1
35
97
0
207
13
7
16
62
1.53
6424--6450
14
1.9
14
100
0
54
74
3
7
14
1.18
7739--7896
86
1.8
86
94
0
280
36
20
18
24
1.95
8186--8307
46
2.7
43
87
5
172
51
12
9
26
1.70
13873--13916
21
2.0
23
86
8
65
34
11
29
25
1.91
13675--14045
22
17.0
21
74
11
209
35
9
18
36
1.83
13794--14186
44
8.8
43
70
14
163
37
10
18
33
1.86
13674--14207
66
8.0
66
71
13
285
35
9
18
35
1.84
14128--14203
22
3.4
23
82
7
86
35
10
19
34
1.86
14083--14203
44
2.8
43
72
8
111
36
11
16
35
1.85
14253--14336
22
3.8
22
75
1
78
42
8
15
33
1.77

Tables:   1

The End!