Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017603.1 Corchorus olitorius cultivar O-4 contig17636, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51306

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7888--7920
15
2.2
15
100
0
66
15
0
24
60
1.35
10702--11000
22
13.6
22
70
12
150
34
10
16
38
1.82
10855--10960
46
2.4
45
87
3
142
33
14
14
37
1.86
10998--11040
22
2.0
22
86
9
61
37
6
23
32
1.82
11082--11153
22
3.4
21
77
9
76
40
6
9
43
1.65
12704--13679
439
2.2
436
86
4
1335
42
16
13
27
1.86
13856--13894
2
20.5
2
89
10
64
51
0
0
48
1.00
22787--22816
2
15.0
2
100
0
60
50
0
0
50
1.00
28030--28114
42
2.0
41
86
2
116
43
27
12
16
1.84
31237--31338
51
2.0
50
83
9
127
22
21
14
41
1.90
41002--41027
13
2.0
13
100
0
52
15
0
30
53
1.42
44440--44657
99
2.2
102
90
3
343
19
4
28
47
1.69

Tables:   1

The End!