Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017605.1 Corchorus olitorius cultivar O-4 contig17638, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51594

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6605--6698
45
2.2
43
86
7
129
37
21
6
35
1.79
11265--11309
19
2.4
19
81
7
56
6
13
33
46
1.69
11573--11602
15
1.9
16
93
6
53
56
10
26
6
1.57
12765--12845
38
2.1
38
97
0
153
41
9
4
43
1.59
16483--16508
11
2.4
11
100
0
52
7
15
7
69
1.35
17268--17309
15
2.7
15
92
3
66
11
9
14
64
1.50
18806--18911
56
1.9
54
90
3
167
50
8
8
33
1.63
20157--20216
16
3.8
16
80
6
59
5
36
1
56
1.31
20171--20214
16
2.7
17
86
10
65
6
29
2
61
1.34
25057--25135
29
2.7
29
90
0
131
43
15
12
29
1.83
25299--25339
2
20.5
2
100
0
82
48
0
0
51
1.00
27378--27459
29
2.8
29
90
0
137
43
14
12
29
1.82
27513--27565
23
2.3
23
96
0
97
47
1
15
35
1.56
27641--27671
2
15.5
2
100
0
62
48
0
0
51
1.00
31496--31528
6
5.7
6
85
7
50
15
21
15
48
1.81
32265--32360
48
2.0
47
89
2
147
21
4
30
43
1.71
37673--37771
31
3.2
32
71
16
93
33
22
9
35
1.86
41545--41635
29
3.1
29
75
19
91
36
10
19
32
1.87
44993--45159
62
2.7
62
100
0
334
46
17
9
26
1.78
46780--46905
63
2.0
63
93
0
216
23
28
29
18
1.98
49663--50747
334
3.3
328
78
8
1053
35
16
14
33
1.89
50789--50967
94
1.9
94
84
3
243
55
3
6
35
1.41

Tables:   1

The End!