Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017607.1 Corchorus olitorius cultivar O-4 contig17640, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12920
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:6213 original size:19 final size:18

Alignment explanation


    Indices: 6189--6224  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       6179 TGAAGACTTA

                    *          
       6189 TTGAAGACTATTTGAAGAT
          1 TTGAAGACCA-TTGAAGAT

                             
       6208 TTGAAGACCATTGAAGA
          1 TTGAAGACCATTGAAGA

       6225 ATAATTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31


Consensus pattern (18 bp):   
TTGAAGACCATTGAAGAT
Done.