Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001761.1 Corchorus olitorius cultivar O-4 contig01761, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 668

Length: 1114
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32


Found at i:74 original size:36 final size:36

Alignment explanation


    Indices: 12--111  Score: 152
    Period size: 36  Copynumber: 2.8  Consensus size: 36

          2 ATTTCCTTGA

                                                 
         12 AATTAAGTCTTTGAC-TG-ATTTACTTAATTACCCTG
          1 AATTAAGTCTTTG-CTTGTATTTACTTAATTACCCTG

                      *                         
         47 AATTAAGTCTGTGCTTGTATTTACTTAATTACCCTG
          1 AATTAAGTCTTTGCTTGTATTTACTTAATTACCCTG

                                          
         83 AATTAAGTCTTTGCTTGCT-TTTACTTAAT
          1 AATTAAGTCTTTGCTTG-TATTTACTTAAT

        112 GCATGGATGC


Statistics
Matches: 60,  Mismatches: 2, Indels: 5
        0.90            0.03        0.07

Matches are distributed among these distances:
  34    1  0.02
  35   14  0.23
  36   44  0.73
  37    1  0.02

ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46


Consensus pattern (36 bp):   
AATTAAGTCTTTGCTTGTATTTACTTAATTACCCTG
Done.