Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017613.1 Corchorus olitorius cultivar O-4 contig17646, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22978

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
886--942
28
1.9
31
86
10
84
50
0
0
49
1.00
3186--3258
27
2.7
27
87
6
103
56
26
8
9
1.59
3186--3259
14
5.5
13
73
7
58
55
25
9
9
1.62
3103--3395
135
2.2
136
87
5
414
57
20
10
11
1.63
3318--3395
28
2.8
28
75
11
88
57
21
8
11
1.61
9047--9072
2
13.0
2
100
0
52
50
0
0
50
1.00
9135--9191
22
2.6
22
88
0
87
40
15
5
38
1.70
9135--9233
43
2.3
44
82
1
110
42
16
7
34
1.75
9792--9834
18
2.4
18
88
7
61
25
30
6
37
1.82
13107--13149
22
2.0
22
90
0
68
20
23
32
23
1.98
13128--13249
50
2.4
50
89
2
174
18
22
23
35
1.96

Tables:   1

The End!