genome.fa.s17616.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017616.1 Corchorus olitorius cultivar O-4 contig17649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51045

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3525--3572	24	2.0	24	100	0	96	20	0	37	41	1.53
10399--10451	27	2.0	27	100	0	106	43	41	11	3	1.58
11469--11549	28	2.7	31	77	12	89	38	2	9	49	1.49
11845--11880	17	2.1	17	94	0	63	33	13	5	47	1.67
14123--14186	27	2.5	26	87	5	85	34	9	18	37	1.83
14252--14370	7	17.0	7	91	0	166	18	0	22	58	1.39
14224--14328	28	3.8	28	84	0	84	23	0	20	55	1.49
14508--14573	33	2.0	33	87	0	96	30	6	21	42	1.77
14510--14586	33	2.3	33	84	0	91	32	7	16	42	1.77
14624--14793	55	3.1	53	80	9	148	32	20	16	30	1.94
14723--15419	54	13.2	53	82	8	689	35	21	14	27	1.93
15210--15298	43	2.2	40	88	8	126	37	23	13	25	1.92
15156--15342	93	2.0	94	88	4	277	38	22	13	25	1.91
15494--15846	37	9.6	37	76	2	264	43	12	17	26	1.85
15494--15842	74	4.7	74	84	3	445	43	12	17	26	1.85
15492--15846	149	2.4	147	84	5	457	43	12	17	26	1.85
16815--16907	22	4.2	22	75	13	73	1	23	2	73	1.01
16828--16904	11	6.9	11	77	12	68	0	24	1	74	0.90
17274--17298	13	1.9	13	100	0	50	0	20	0	80	0.72
17522--17585	14	4.7	13	83	12	67	35	12	10	40	1.78
20622--20679	19	2.9	19	76	5	62	31	18	12	37	1.88
21195--21267	12	5.9	12	83	4	92	34	15	24	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21197--21267	25	2.9	25	85	2	99	35	15	22	26	1.94
22078--22123	10	4.6	10	94	0	74	34	8	17	39	1.80
22803--22844	22	1.9	22	90	0	66	4	26	40	28	1.76
25267--25331	18	3.3	18	66	25	51	36	6	15	41	1.72
25266--25346	41	2.0	41	100	0	162	38	7	17	37	1.78
25283--25350	20	3.3	20	67	25	61	36	7	16	39	1.76
25462--25531	22	3.4	20	77	12	70	50	7	18	24	1.72
25462--25529	21	3.2	20	78	10	64	51	7	19	22	1.71
25518--25584	22	3.0	23	78	10	75	40	4	13	41	1.64
25567--25669	22	4.8	20	81	9	98	40	10	10	37	1.75
25567--25669	43	2.4	44	85	4	129	40	10	10	37	1.75
32893--32968	37	2.1	37	92	0	125	34	10	22	32	1.88
34183--34985	429	1.9	422	84	4	1020	27	12	16	42	1.84
40667--40958	145	2.0	145	96	0	539	31	19	18	30	1.96
41695--43719	934	2.2	911	88	4	2921	36	14	15	33	1.87

Tables:   1

The End!