genome.fa.s17617.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017617.1 Corchorus olitorius cultivar O-4 contig17650, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73489

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1831--1893	9	7.1	9	76	16	60	42	1	3	52	1.27
1831--1885	15	3.7	15	76	11	51	43	1	3	50	1.30
2825--2854	2	15.0	2	100	0	60	50	0	0	50	1.00
9909--9938	15	1.9	16	93	6	53	80	3	13	3	0.97
10983--11047	20	3.2	20	91	0	103	46	6	24	23	1.75
11057--11112	25	2.2	25	83	0	67	50	5	19	25	1.69
11148--11199	21	2.5	20	74	22	52	50	7	17	25	1.72
11250--11538	21	13.6	21	76	15	247	51	5	20	22	1.68
11161--11538	42	8.7	42	76	14	303	51	5	20	22	1.69
11253--11453	102	2.0	102	90	3	314	52	5	19	21	1.66
11435--11476	14	2.9	14	89	3	57	57	9	16	16	1.65
11266--11475	102	2.0	102	87	1	303	53	6	19	20	1.66
11573--11683	36	3.1	36	89	2	179	55	3	17	23	1.57
11573--11684	35	3.2	35	90	1	179	55	3	17	23	1.58
11564--11719	71	2.2	71	79	6	190	58	4	17	19	1.56
11674--11765	27	3.4	28	75	12	86	61	3	19	15	1.46
12454--12547	42	2.3	42	84	1	127	47	14	0	37	1.45
14982--15044	32	2.0	32	90	0	99	39	33	11	15	1.83
17655--17681	2	13.5	2	100	0	54	48	0	0	51	1.00
27157--27208	22	2.4	22	80	3	61	15	17	50	17	1.79
27464--27506	23	2.0	23	86	9	63	4	20	53	20	1.63
27467--27585	54	2.2	54	84	3	159	12	21	47	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30514--30605	48	2.0	46	85	8	123	53	15	8	22	1.69
33378--33522	73	2.0	73	98	0	281	35	8	22	33	1.85
35922--35957	17	2.1	17	100	0	72	44	11	16	27	1.82
36034--36107	28	2.7	27	89	4	112	36	27	17	18	1.94
36582--36652	27	2.6	27	88	0	106	36	25	19	18	1.94
37172--37378	69	3.0	68	83	6	272	26	15	30	27	1.96
37416--37622	69	3.0	69	95	1	362	25	20	29	24	1.99
44722--44783	33	1.9	32	96	3	115	16	46	19	17	1.84
44804--44858	21	2.6	21	85	0	65	18	49	20	12	1.79
48427--48605	91	2.0	91	93	0	304	40	13	16	28	1.87
49052--49112	29	2.1	29	87	0	86	39	9	21	29	1.85
49103--49198	50	1.9	50	87	4	140	39	16	14	29	1.88
50244--50294	17	3.1	17	78	13	52	5	17	0	76	0.98
52523--52558	19	1.9	18	88	5	54	41	2	22	33	1.68
62743--62778	17	2.1	17	100	0	72	44	11	16	27	1.82
64719--64919	106	1.9	105	94	1	357	35	19	23	21	1.96
68769--68943	87	2.0	87	98	0	341	34	14	10	39	1.82
70112--70159	24	2.0	24	87	0	69	22	6	25	45	1.75
72111--73485	22	62.9	21	69	14	464	38	9	16	35	1.82
72133--72706	67	8.6	68	70	15	272	37	9	17	35	1.83
73045--73085	21	2.0	21	90	0	64	48	4	19	26	1.69
73268--73353	45	1.9	45	83	4	111	33	11	16	38	1.85

Tables:   1

The End!