Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017621.1 Corchorus olitorius cultivar O-4 contig17654, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41987

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2796--2868
21
3.4
21
78
1
65
17
21
41
19
1.91
5952--6028
29
2.8
28
84
5
95
44
12
7
35
1.72
5951--6028
26
2.9
26
81
11
86
44
12
7
34
1.71
6042--6127
24
3.3
26
82
11
88
32
12
12
41
1.81
12648--12809
82
2.0
82
92
2
272
39
7
19
33
1.80
12881--12925
19
2.4
18
85
3
54
44
0
2
53
1.13
20102--20352
131
2.0
127
88
6
377
37
10
1
49
1.48
20905--21528
316
2.0
315
96
1
1160
34
13
4
47
1.62
21550--21588
14
2.9
13
80
3
51
41
2
2
53
1.28
22446--23011
188
3.0
188
95
1
976
32
18
18
31
1.95
26394--26429
13
2.7
14
87
12
58
5
2
13
77
1.05
29397--29421
10
2.5
10
100
0
50
16
0
0
84
0.63
36201--36292
22
4.4
21
72
21
68
34
17
8
39
1.80
36247--36952
22
32.3
21
72
12
374
34
16
9
39
1.81
36563--36654
46
2.0
45
85
6
123
36
19
6
36
1.78
37064--37285
22
10.0
22
71
11
107
33
16
9
40
1.80
37064--37231
44
3.8
42
74
6
131
35
14
8
41
1.76
37317--37473
22
7.1
21
70
16
97
33
18
8
38
1.82
37319--37431
44
2.6
44
80
6
122
33
20
8
37
1.84
41516--41559
16
2.8
16
82
0
61
36
38
15
9
1.80

Tables:   1

The End!