Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017622.1 Corchorus olitorius cultivar O-4 contig17655, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17984

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5908--5964
30
1.9
29
89
10
89
21
14
5
59
1.54
7488--7523
19
1.9
18
88
5
54
41
8
22
27
1.82
12596--12626
9
3.4
9
95
0
53
41
32
3
22
1.70
16223--16431
70
3.0
70
92
0
337
25
27
18
29
1.98
16444--16682
128
1.9
128
99
0
469
26
21
18
33
1.96
16599--16752
70
2.2
70
96
1
283
22
22
20
35
1.96
16471--16933
198
2.3
197
89
2
705
26
21
18
33
1.96
17226--17317
43
2.1
43
82
9
116
19
16
18
45
1.85
17328--17421
43
2.2
43
82
3
109
26
14
15
42
1.86
17437--17529
18
4.9
19
85
15
104
83
10
1
4
0.82
17437--17507
6
11.7
6
89
8
108
84
12
0
2
0.73
17423--17521
1
99.0
1
68
0
54
83
11
0
5
0.78
17422--17523
25
4.1
25
81
9
102
82
12
0
4
0.82

Tables:   1

The End!