Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017623.1 Corchorus olitorius cultivar O-4 contig17656, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99471

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--51
3
8.3
3
100
0
50
32
0
0
68
0.90
1030--1090
30
2.0
31
84
9
81
0
11
55
32
1.36
3242--3282
15
2.8
15
79
17
50
34
0
0
65
0.93
3988--4038
16
3.3
16
78
15
63
84
0
15
0
0.63
4000--4038
10
3.9
10
80
12
53
87
0
12
0
0.55
4003--4027
11
2.3
11
100
0
50
92
0
8
0
0.40
11176--11204
14
2.1
14
100
0
58
48
24
6
20
1.74
11371--11588
108
2.0
108
93
0
373
29
22
9
38
1.85
17345--17378
16
2.1
16
94
0
59
58
0
0
41
0.98
19096--19126
10
3.0
10
95
4
53
0
9
3
87
0.66
19082--19118
17
2.2
17
95
0
65
0
13
0
86
0.57
19710--19955
127
1.9
128
86
4
354
28
20
9
41
1.84
21463--21517
28
2.0
27
86
10
76
12
10
27
49
1.74
22603--22644
22
2.0
21
85
4
57
33
4
2
59
1.31
26066--26159
42
2.3
42
92
1
154
45
17
0
37
1.48
27614--27717
49
2.1
49
94
1
183
47
7
9
35
1.65
32957--32990
14
2.4
14
90
0
50
8
20
32
38
1.84
41676--41797
60
2.0
60
98
0
235
41
18
17
22
1.90
42176--42253
31
2.5
30
83
6
102
35
2
24
37
1.69
45413--46005
302
2.0
303
93
0
1017
34
16
21
27
1.95
46353--46617
132
2.0
132
88
2
399
36
11
2
49
1.51
50081--50144
29
2.2
29
83
8
85
18
15
17
48
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50785--50829
19
2.4
19
82
10
56
22
6
8
62
1.48
51808--52414
303
2.0
303
91
0
989
33
17
21
27
1.96
52729--52787
19
3.0
19
85
5
73
33
18
11
35
1.88
54020--54105
30
2.8
30
89
3
118
39
4
25
30
1.76
55397--56599
303
4.0
303
91
0
1892
33
18
21
27
1.96
63848--63879
2
16.0
2
100
0
64
50
0
0
50
1.00
64353--64409
17
3.2
18
82
7
55
35
21
21
22
1.96
64363--64409
17
2.8
17
86
0
67
36
17
23
23
1.95
66682--66893
106
2.0
107
91
0
345
33
16
16
33
1.92
66901--66925
2
12.5
2
100
0
50
48
0
0
52
1.00
67389--67424
3
12.0
3
100
0
72
66
0
0
33
0.92
69864--69904
22
2.0
22
90
9
68
14
21
14
48
1.80
80818--81261
223
2.0
223
91
2
723
34
21
10
34
1.87
82327--82585
101
2.6
99
87
4
351
40
9
9
41
1.69
83388--83448
18
3.4
18
78
10
63
63
0
1
34
1.04
83662--83712
3
17.0
3
88
8
77
0
37
0
62
0.95
89081--89206
62
2.0
62
96
0
234
26
25
12
34
1.92
89194--89228
19
1.9
17
88
11
52
31
25
0
42
1.55
97914--97972
19
3.0
19
85
9
82
37
10
20
32
1.86
97914--98062
40
3.5
40
67
19
120
34
12
22
30
1.91
97892--98069
90
2.0
90
96
0
329
33
13
23
30
1.93
97998--98061
21
3.2
20
86
8
85
35
12
20
31
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99443--99471
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!