genome.fa.s17625.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017625.1 Corchorus olitorius cultivar O-4 contig17658, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  173177

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475--626	22	6.5	22	76	8	142	40	15	20	24	1.90
1247--1300	2	27.0	2	96	0	99	48	0	1	50	1.11
4460--4490	12	2.6	12	100	0	62	80	0	19	0	0.71
5390--5469	28	2.8	28	86	5	97	33	10	25	31	1.89
12914--12949	6	6.0	6	100	0	72	50	33	16	0	1.46
14219--14248	1	30.0	1	93	0	51	0	0	3	96	0.21
14214--14248	13	2.8	13	91	4	54	0	0	8	91	0.42
20770--20872	52	2.0	51	81	9	120	21	22	13	42	1.87
23247--23291	19	2.4	18	82	10	54	0	60	4	35	1.17
33355--33414	25	2.4	25	88	0	84	18	25	45	11	1.83
34258--34298	22	1.9	21	85	5	55	43	4	17	34	1.70
39090--39140	21	2.4	22	80	3	59	45	11	15	27	1.81
39111--39211	43	2.3	43	79	3	114	45	9	15	28	1.79
39135--39244	43	2.5	42	84	5	139	41	9	13	35	1.76
39221--39312	22	4.2	21	75	9	60	39	9	11	39	1.75
48235--48270	19	1.9	18	88	5	54	27	22	8	41	1.82
55354--55389	19	1.9	18	88	5	54	27	22	8	41	1.82
56291--56367	33	2.3	33	95	0	136	40	20	5	33	1.75
58144--58225	38	2.2	38	86	0	110	4	41	40	13	1.66
61616--61662	22	2.0	24	88	12	71	44	4	4	46	1.42
68350--68385	18	2.1	17	89	5	54	11	13	11	63	1.51
69771--69826	29	1.9	29	96	0	103	35	23	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73701--73880	47	3.8	47	90	1	263	16	26	21	36	1.93
73851--74326	41	11.7	41	80	1	521	13	31	19	35	1.91
73859--74246	81	4.8	81	84	3	287	13	31	20	34	1.91
73804--74326	122	4.2	121	80	2	526	13	30	20	35	1.91
73945--74326	163	2.3	163	88	1	543	14	30	19	35	1.91
74372--74526	65	2.3	66	80	9	163	22	24	18	34	1.96
76392--76431	18	2.2	18	86	4	53	45	5	20	30	1.72
89779--89818	16	2.5	16	83	0	53	37	35	17	10	1.83
90278--90349	31	2.3	31	75	17	78	26	4	8	61	1.43
91742--91781	20	2.0	19	85	9	53	10	32	7	50	1.64
91762--91806	24	1.9	24	86	4	65	17	20	4	57	1.56
94098--94123	10	2.6	10	100	0	52	7	26	11	53	1.63
96752--96913	86	1.9	86	90	2	263	50	2	14	32	1.56
97154--97407	140	1.8	138	89	1	400	37	11	2	49	1.51
99185--99246	31	2.0	31	87	6	90	32	16	16	35	1.91
103080--103187	32	3.3	33	80	5	103	16	36	31	15	1.91
109794--109867	33	2.2	33	90	0	121	8	29	41	20	1.81
109846--109971	33	3.9	33	80	10	152	12	37	34	15	1.85
110225--110310	29	2.9	30	81	10	88	32	19	12	34	1.90
114626--114877	66	3.8	66	94	0	450	22	34	16	26	1.95
115443--116225	167	4.7	166	81	6	803	37	19	18	24	1.94
116156--116308	80	1.9	79	81	1	180	44	18	16	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127175--127213	18	2.2	18	100	0	78	38	20	15	25	1.92
128493--128555	32	1.9	34	83	6	85	14	14	1	69	1.26
141189--141228	21	1.9	21	85	10	55	30	7	30	32	1.85
165341--165385	10	4.5	10	88	0	63	44	13	4	37	1.64
165348--165389	20	2.1	20	95	0	75	47	14	2	35	1.57
167012--167062	21	2.4	22	80	6	68	43	17	25	13	1.86
167149--167209	29	2.1	30	90	3	97	40	14	26	18	1.89
168767--168837	35	2.0	35	94	0	124	26	14	18	40	1.88
170370--170423	27	2.0	27	96	0	99	48	24	0	27	1.52
170425--170454	12	2.4	12	94	5	51	70	20	0	10	1.16
172412--172438	14	1.9	14	100	0	54	37	11	7	44	1.68

Tables:   1

The End!