Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017626.1 Corchorus olitorius cultivar O-4 contig17659, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3462
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35


Found at i:582 original size:2 final size:2

Alignment explanation


    Indices: 575--618  Score: 79
    Period size: 2  Copynumber: 22.0  Consensus size: 2

        565 ATCTTTTACA

                            *                                             
        575 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

              
        617 AT
          1 AT

        619 TCATAAGAAT


Statistics
Matches: 40,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   40  1.00

ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.