Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017627.1 Corchorus olitorius cultivar O-4 contig17660, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82917

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4252--4386
60
2.3
59
81
2
144
38
11
23
26
1.88
6548--7121
22
26.3
22
71
12
255
34
16
10
38
1.84
6876--7038
82
2.0
84
85
2
222
34
17
7
39
1.79
7203--7372
44
3.9
44
72
9
141
34
13
10
41
1.78
7203--7374
22
7.8
22
72
8
100
34
13
9
41
1.78
7227--7374
66
2.2
66
81
0
161
34
14
9
41
1.79
7202--7368
88
1.9
88
83
2
219
33
14
10
41
1.79
7371--7397
12
2.2
12
100
0
54
37
14
0
48
1.45
8956--9048
44
2.1
44
98
2
179
54
16
10
18
1.69
9045--9093
23
2.1
23
85
7
64
48
22
14
14
1.79
15480--15697
109
2.0
109
94
0
382
31
11
13
43
1.80
17702--17893
97
2.0
95
89
3
296
39
14
16
30
1.87
18713--18909
103
1.9
102
93
1
340
49
5
9
36
1.58
19152--19178
13
2.1
13
100
0
54
55
22
7
14
1.64
25772--25814
19
2.1
22
83
12
56
67
18
0
13
1.23
34438--34523
31
2.8
31
83
3
111
29
17
23
30
1.97
35956--36000
2
23.5
2
91
8
76
51
0
0
48
1.00
35956--36000
15
3.1
15
96
3
83
51
0
0
48
1.00
37570--37617
2
24.5
2
91
4
71
52
0
0
47
1.00
37581--37624
21
2.1
21
100
0
88
56
0
0
43
0.99
38522--38588
32
2.1
33
83
8
84
74
0
22
2
0.95
38514--38593
25
3.2
23
78
16
72
72
0
23
3
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44321--44356
15
2.3
16
95
4
65
47
11
5
36
1.63
44693--45237
182
3.0
182
99
0
1074
40
16
10
32
1.82
50003--50120
37
3.1
37
85
3
146
33
16
17
31
1.93
52942--53008
25
2.7
25
97
0
125
11
34
17
35
1.87
59743--59860
32
3.7
32
95
0
209
39
29
5
25
1.77
60311--60472
76
2.1
76
91
0
270
28
27
16
28
1.97
63302--63337
19
1.9
18
88
5
54
41
8
22
27
1.82
71797--71864
34
2.0
34
94
0
118
48
7
20
23
1.74
72505--72859
30
11.8
30
87
3
489
44
20
14
20
1.86
72442--72859
122
3.4
121
85
4
509
44
20
14
21
1.86
72997--73397
168
2.4
169
88
1
590
34
15
19
29
1.93
73277--73534
103
2.5
102
85
1
329
38
16
17
27
1.91
73634--73801
69
2.4
69
97
2
311
28
14
30
26
1.95
75040--75078
20
1.9
20
84
5
51
5
25
0
69
1.09
75065--75109
7
5.8
8
89
10
67
11
11
0
77
0.99
81492--81532
21
1.9
22
85
5
57
51
4
17
26
1.65
81597--81702
41
2.6
41
79
8
119
40
16
16
26
1.89

Tables:   1

The End!