Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017628.1 Corchorus olitorius cultivar O-4 contig17661, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56765

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
294--359
34
1.9
34
93
0
114
50
7
21
21
1.73
7670--7879
22
9.5
22
75
11
187
35
7
18
39
1.78
7671--8587
44
21.4
43
66
20
191
37
9
17
35
1.81
7667--7879
66
3.2
66
82
7
254
35
7
18
38
1.78
7923--8253
22
14.8
22
69
16
155
40
10
16
33
1.82
8081--8229
66
2.3
66
84
0
190
40
10
16
33
1.81
8421--8585
68
2.5
64
79
9
156
38
8
16
36
1.79
8378--8541
87
1.9
87
83
5
215
39
7
17
35
1.79
8462--8541
23
3.5
23
87
1
108
37
7
17
37
1.78
8335--8587
22
11.5
22
70
14
141
38
9
16
36
1.80
8557--8606
22
2.3
23
80
16
61
38
12
14
36
1.83
8658--8721
22
2.9
22
78
0
65
37
12
14
35
1.83
8746--8787
22
1.9
22
85
9
59
54
4
11
28
1.57
8798--8851
22
2.5
22
84
0
63
42
11
9
37
1.73
8819--8866
22
2.2
22
85
7
62
50
8
14
27
1.71
11871--11922
22
2.5
20
75
15
52
44
1
0
53
1.11
11916--12136
113
2.0
113
90
1
354
44
14
9
31
1.77
12290--12322
16
2.1
16
100
0
66
30
18
12
39
1.87
13114--13172
2
29.5
2
75
24
54
50
6
0
42
1.28
13113--13228
45
2.7
44
84
7
141
58
3
0
37
1.15
13178--13228
3
17.7
3
92
8
88
66
0
0
33
0.92
13138--13228
6
15.0
6
85
11
89
60
3
0
36
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17030--17083
27
2.0
27
85
0
72
37
11
18
33
1.86
32867--32935
21
3.3
21
73
15
70
28
43
20
7
1.78
33428--33471
20
2.1
21
83
4
54
9
11
20
59
1.59
34274--34315
21
2.0
21
86
9
59
47
35
0
16
1.47
35135--35183
25
2.0
25
95
0
89
14
30
20
34
1.92
35180--35222
21
2.0
21
86
8
61
46
34
0
18
1.50
36379--36448
29
2.6
26
80
8
70
61
4
5
28
1.38
39069--39140
36
2.0
36
94
0
126
31
29
9
29
1.89
42471--42546
30
2.5
30
81
8
84
44
21
10
23
1.83
47956--48004
21
2.3
21
83
13
57
63
10
4
22
1.43

Tables:   1

The End!