genome.fa.s17631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017631.1 Corchorus olitorius cultivar O-4 contig17664, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61875

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2947--2993	21	2.2	21	96	0	85	17	21	25	36	1.94
10357--10450	45	2.2	43	88	7	138	39	22	4	34	1.74
11421--11469	3	16.3	3	95	0	89	32	2	0	65	1.04
11544--11617	28	2.7	28	80	2	78	14	16	28	40	1.88
18284--18510	68	3.3	69	86	3	316	21	29	23	25	1.99
18808--18838	16	1.9	16	93	0	53	38	25	12	22	1.90
21400--21426	2	13.5	2	100	0	54	48	0	0	51	1.00
23359--23441	35	2.3	36	93	2	141	20	18	16	44	1.87
23600--23768	69	2.4	69	93	0	275	26	30	14	27	1.95
24153--25049	30	29.7	30	83	7	909	20	14	17	47	1.82
24153--25049	60	14.9	60	83	6	1019	20	14	17	47	1.82
24153--25049	90	9.9	90	83	7	1030	20	14	17	47	1.82
24739--24817	38	2.1	38	90	0	122	16	13	17	51	1.76
25572--25645	28	2.7	28	85	2	87	14	14	28	41	1.86
28355--28433	41	2.0	41	82	5	99	24	12	13	49	1.77
33393--33431	20	2.0	20	85	10	53	28	5	2	64	1.28
33597--33806	22	9.5	22	70	10	106	37	8	17	36	1.81
33642--33679	20	1.9	20	88	0	58	36	15	13	34	1.87
33596--33716	64	1.9	64	84	6	165	37	9	19	33	1.85
33811--34643	22	37.6	22	68	15	276	38	9	16	35	1.81
34518--34643	45	2.8	45	82	8	141	36	9	15	38	1.81
34563--34653	22	4.1	22	81	4	76	34	9	16	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34655--34755	52	1.9	52	100	0	202	7	23	44	23	1.79
35041--35065	12	2.1	12	100	0	50	56	0	8	36	1.29
35292--35376	44	1.9	45	81	11	104	29	11	17	41	1.85
35314--35376	22	2.8	22	82	2	72	30	14	17	38	1.89
35483--35532	22	2.3	22	85	0	64	40	8	12	40	1.72
35504--35551	22	2.2	22	81	7	53	47	6	16	29	1.71
39683--39843	31	5.2	31	88	0	196	18	22	24	34	1.96
39652--39845	93	2.1	91	83	1	235	17	22	25	34	1.96
40340--40404	32	2.1	32	86	8	91	21	27	27	23	1.99
41827--41968	69	2.0	70	89	6	218	21	14	15	48	1.80
43760--43810	23	2.0	25	82	14	61	41	1	5	50	1.37
52068--52112	21	2.2	20	88	11	65	62	4	17	15	1.49
59422--60385	321	3.0	317	82	9	1240	33	10	16	39	1.83
60808--60897	43	2.1	43	100	0	180	32	11	15	41	1.82
61166--61232	32	2.1	31	86	2	89	22	13	29	34	1.92

Tables:   1

The End!