Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017634.1 Corchorus olitorius cultivar O-4 contig17667, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31868

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3822--3858
19
1.9
19
100
0
74
62
5
10
21
1.48
4320--4353
15
2.1
17
89
10
54
58
2
0
38
1.13
4217--4371
82
1.9
80
85
5
213
44
4
10
40
1.60
6145--6183
15
2.8
13
82
14
51
25
17
0
56
1.41
20483--20521
19
2.1
19
85
9
53
64
5
2
28
1.28
20730--20781
25
2.1
25
88
0
77
42
13
3
40
1.62
30862--30901
20
2.0
20
100
0
80
45
20
10
25
1.81
31391--31491
30
3.4
30
95
2
177
37
13
20
27
1.91

Tables:   1

The End!