genome.fa.s17641.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017641.1 Corchorus olitorius cultivar O-4 contig17674, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69112

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2092--2781	68	10.5	68	79	8	642	22	20	14	43	1.88
2090--2753	197	3.4	194	79	7	669	21	20	14	43	1.88
2499--2656	61	2.5	61	84	7	181	21	19	17	41	1.90
2168--2673	129	3.9	129	77	9	357	21	20	15	42	1.89
2168--2743	129	4.4	129	77	10	332	21	20	15	42	1.89
2695--2850	65	2.4	66	79	5	165	25	20	13	40	1.89
8209--8238	2	15.0	2	92	0	51	46	0	0	53	1.00
8353--8389	10	3.8	10	89	3	58	13	0	72	13	1.11
22423--23418	22	44.9	22	72	17	344	44	4	20	30	1.71
22426--23418	44	23.4	44	72	18	500	44	4	20	31	1.71
22423--23415	58	16.4	57	71	19	374	44	4	20	31	1.71
22588--23393	14	56.5	14	70	18	380	44	4	19	31	1.70
22434--23391	8	131.7	7	67	21	183	44	4	20	31	1.72
23444--23474	16	1.9	16	93	0	53	41	3	29	25	1.71
30823--31068	41	5.8	42	74	8	203	22	10	29	37	1.88
30792--31061	84	3.2	83	81	5	292	22	11	28	38	1.88
30823--31061	43	5.7	41	74	9	187	21	10	28	38	1.87
31461--31497	18	2.1	18	89	0	56	35	24	8	32	1.85
32709--32737	14	2.1	14	100	0	58	20	6	34	37	1.80
34489--34522	17	1.9	18	88	5	52	35	11	8	44	1.72
34948--34981	17	2.0	17	94	0	59	29	38	5	26	1.80
40006--40054	21	2.3	21	82	6	55	16	26	16	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41136--41191	25	2.2	25	87	6	76	78	1	10	8	1.03
42608--42645	18	2.1	19	90	5	60	10	18	7	63	1.50
43803--43828	2	13.0	2	100	0	52	50	0	0	50	1.00
52521--52558	18	2.1	19	90	5	60	10	18	7	63	1.50
54540--54681	76	1.9	76	81	8	173	16	26	30	26	1.97
55876--56139	29	9.0	29	77	17	237	59	6	4	28	1.43
55907--55997	44	2.1	42	93	4	155	60	6	5	27	1.44
55878--56099	73	3.1	73	96	1	412	60	6	4	27	1.43
55876--56139	102	2.6	97	87	9	384	59	6	4	28	1.43
55980--56068	44	2.1	41	93	6	151	60	6	5	26	1.44
57990--58022	15	2.2	15	89	10	50	3	15	0	81	0.80
63311--63347	18	2.1	18	89	0	56	43	0	2	54	1.14
64991--65077	31	2.8	31	87	0	120	41	3	20	34	1.69
64991--65088	31	3.2	30	81	11	110	39	3	19	37	1.67
67963--68028	31	2.1	31	86	10	91	34	13	7	43	1.73
68489--68555	31	2.2	31	89	5	102	47	10	19	22	1.79
68685--68825	31	4.6	31	78	7	137	31	17	12	38	1.88

Tables:   1

The End!