Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017642.1 Corchorus olitorius cultivar O-4 contig17675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117105

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
672--817
31
4.8
29
76
11
98
41
11
14
32
1.82
947--1010
31
2.1
31
88
5
96
21
18
12
46
1.82
947--1021
29
2.5
31
81
12
93
22
21
12
44
1.85
1078--1219
64
2.2
64
91
0
230
29
23
13
33
1.93
1187--1710
67
7.9
67
91
0
818
27
24
12
35
1.91
2972--3010
20
2.0
20
90
10
62
15
12
20
51
1.76
7305--7343
18
2.1
19
85
4
53
10
5
23
61
1.48
7974--8010
18
2.1
18
95
5
67
81
0
13
5
0.86
12328--12353
11
2.4
11
100
0
52
7
15
7
69
1.35
13114--13155
15
2.7
15
92
3
66
11
9
14
64
1.50
16707--16783
17
4.6
16
76
12
75
59
2
6
31
1.36
16747--16782
15
2.3
16
90
4
56
61
2
5
30
1.33
16699--16790
33
2.7
34
82
14
111
58
2
7
31
1.38
18307--18395
30
2.9
31
71
15
78
31
17
12
38
1.87
20046--20084
20
2.0
20
89
0
60
38
2
5
53
1.37
23530--23603
33
2.2
33
95
0
130
12
33
40
13
1.82
26146--26187
15
2.7
15
96
3
75
11
7
14
66
1.43
26539--26595
28
2.0
28
82
0
69
45
8
8
36
1.66
28617--28661
21
2.1
21
84
12
56
15
37
31
15
1.89
29376--29405
15
2.1
14
93
6
51
13
16
6
63
1.50
32257--32298
15
2.7
15
96
3
75
11
7
14
66
1.43
33209--33336
45
2.8
45
95
0
229
35
7
20
37
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38347--38393
16
3.1
15
88
11
62
61
14
8
14
1.55
44721--44795
27
2.8
27
95
0
132
44
16
10
29
1.81
56300--56329
15
2.0
15
100
0
60
0
20
26
53
1.46
57208--58303
546
2.0
546
96
0
2007
30
16
19
34
1.93
60417--60601
93
2.0
93
93
0
316
51
1
13
33
1.51
60494--60540
22
2.1
22
84
7
60
61
2
12
23
1.42
60637--60698
31
2.0
31
93
0
106
43
4
20
30
1.73
61153--61178
13
2.0
13
100
0
52
38
15
23
23
1.92
61748--61809
31
2.0
31
100
0
124
38
12
32
16
1.86
63586--63847
103
2.5
103
83
5
343
40
8
9
41
1.69
68674--68874
41
4.8
42
82
4
237
22
10
26
40
1.86
68664--68874
84
2.5
83
89
1
314
24
9
26
39
1.86
70268--70355
23
3.8
23
70
5
61
15
39
26
18
1.90
75054--75146
31
3.1
30
89
4
134
43
10
16
30
1.82
75305--75531
126
1.8
125
85
4
323
52
1
9
36
1.43
76077--76109
7
4.9
7
92
7
59
87
0
12
0
0.53
76077--76109
13
2.4
14
95
5
59
87
0
12
0
0.53
76074--76110
14
2.6
14
84
16
58
86
0
13
0
0.57
76152--76217
32
2.1
32
97
0
123
33
16
12
37
1.86
76361--76440
29
2.7
30
82
7
92
41
11
18
28
1.85
77709--77827
30
4.0
30
97
0
202
29
20
40
10
1.85
78462--78527
33
2.0
32
91
2
105
34
6
13
45
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78934--78981
22
2.2
22
96
0
87
58
0
20
20
1.40
85913--85939
13
2.1
13
100
0
54
29
7
44
18
1.77
87159--87183
9
2.8
9
100
0
50
36
20
0
44
1.52
89772--89847
6
12.7
6
98
0
143
81
0
0
18
0.69
98984--99021
15
2.6
14
91
4
58
0
7
23
68
1.16
103247--103285
17
2.2
17
86
4
51
76
2
17
2
1.01
104927--105500
69
8.3
69
89
1
889
25
28
18
27
1.98
105430--105618
105
1.8
105
84
0
261
26
25
16
30
1.97
107640--107710
32
2.2
32
97
0
133
19
35
12
32
1.90
110784--110824
17
2.5
17
81
14
50
43
0
0
56
0.99
111714--111944
78
3.0
78
87
3
333
49
1
15
34
1.53
112386--112433
11
4.8
10
82
17
55
47
2
20
29
1.61

Tables:   1

The End!