Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017645.1 Corchorus olitorius cultivar O-4 contig17678, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7829
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:1834 original size:28 final size:29

Alignment explanation


    Indices: 1803--1866  Score: 85
    Period size: 30  Copynumber: 2.2  Consensus size: 29

       1793 CTCTCTCTAA

                          **             
       1803 ACCCTCG-ATCCCTTTGGCTTGGTCTCTC
          1 ACCCTCGAATCCCTCAGGCTTGGTCTCTC

                                         *
       1831 ACCCTCGAAATCCCTCAGGCTTGGTCTCTG
          1 ACCCTCG-AATCCCTCAGGCTTGGTCTCTC

                  
       1861 ACCCTC
          1 ACCCTC

       1867 AAGATGGTTT


Statistics
Matches: 31,  Mismatches: 3, Indels: 2
        0.86            0.08        0.06

Matches are distributed among these distances:
  28    7  0.23
  30   24  0.77

ACGTcount: A:0.12, C:0.41, G:0.17, T:0.30


Consensus pattern (29 bp):   
ACCCTCGAATCCCTCAGGCTTGGTCTCTC

Found at i:7306 original size:2 final size:2

Alignment explanation


    Indices: 7299--7325  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       7289 TTTAGTAACT

                                                    
       7299 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

       7326 TAAGATTATG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.