genome.fa.s17648.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017648.1 Corchorus olitorius cultivar O-4 contig17681, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58439

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2523--2656	61	2.2	61	94	1	243	33	10	41	14	1.79
4799--4834	12	3.1	12	88	4	56	80	0	19	0	0.71
5454--5483	11	2.8	11	95	5	53	13	0	30	56	1.37
6796--6947	76	2.0	76	81	7	175	17	29	28	24	1.97
9811--9838	13	2.2	13	100	0	56	85	7	0	7	0.73
14603--14697	42	2.3	42	83	8	124	23	22	11	43	1.85
14622--14721	42	2.4	42	81	3	112	23	22	14	41	1.89
15842--15877	15	2.5	15	90	4	56	38	8	13	38	1.75
15842--15901	14	4.3	14	85	8	70	40	8	13	38	1.75
17508--17656	49	3.0	50	82	8	155	26	28	16	28	1.97
17723--17876	69	2.2	69	87	3	211	24	28	18	29	1.98
17608--17806	105	1.9	105	90	0	317	26	27	15	31	1.96
17895--18305	35	11.8	34	82	8	434	29	18	20	30	1.97
17895--18305	70	5.9	70	84	5	519	29	18	20	30	1.97
17895--18305	105	3.9	105	82	6	494	29	18	20	30	1.97
18218--18341	34	3.6	34	76	8	133	25	21	24	28	1.99
23688--23723	18	2.0	18	100	0	72	11	11	22	55	1.66
27730--28516	135	5.9	133	78	11	721	23	18	15	42	1.88
27730--28243	202	2.6	196	87	7	694	22	18	16	42	1.89
27730--28486	67	11.3	66	82	9	741	23	18	15	42	1.88
30768--30796	10	2.9	10	100	0	58	0	31	31	37	1.58
33129--33163	17	2.1	17	89	5	54	77	8	0	14	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40070--40099	14	2.1	15	93	6	53	13	13	6	66	1.43
40240--40264	12	2.1	12	100	0	50	16	36	8	40	1.77
44583--44884	154	2.0	154	96	0	559	28	12	19	39	1.89
46118--46540	211	2.0	211	97	0	801	29	18	16	35	1.93
53386--53704	153	2.1	154	92	0	532	28	12	20	39	1.89

Tables:   1

The End!