genome.fa.s17649.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017649.1 Corchorus olitorius cultivar O-4 contig17682, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66416

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588--657	36	1.9	36	94	5	124	60	7	8	24	1.51
1098--1445	182	1.9	182	94	0	615	40	7	13	38	1.72
3067--3248	95	1.9	95	95	0	328	24	18	11	45	1.82
3544--3618	30	2.5	30	93	0	132	53	13	16	17	1.73
4129--4182	22	2.3	24	81	12	60	24	22	5	48	1.72
9836--10004	78	2.2	78	93	2	286	34	12	0	52	1.43
11397--11438	22	1.9	22	85	0	57	14	19	23	42	1.87
11896--12003	31	3.5	31	73	14	125	31	21	20	26	1.98
12045--12145	31	3.3	31	68	15	93	24	19	16	38	1.92
12043--12204	60	2.7	60	92	2	256	26	19	17	36	1.94
12074--12173	28	3.4	28	71	15	103	27	21	19	33	1.97
14648--14687	20	2.1	19	86	9	55	62	12	10	15	1.54
15727--15903	31	5.7	31	89	0	219	35	22	24	18	1.95
15725--15903	62	2.9	62	86	0	241	35	22	24	17	1.95
18434--18488	28	2.0	27	86	10	76	12	10	27	49	1.74
19558--19600	22	2.0	22	90	4	70	44	13	0	41	1.44
19710--19748	13	2.9	13	88	3	51	30	7	23	38	1.83
20776--20828	27	2.0	27	92	0	88	37	3	39	18	1.69
26808--26841	2	17.5	2	93	6	61	50	0	0	50	1.00
29010--29101	40	2.3	41	88	1	141	39	1	14	45	1.52
29027--29104	15	5.5	15	68	13	58	37	1	12	48	1.50
29808--29850	22	2.0	22	85	0	59	27	23	32	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42065--42122	26	2.2	26	96	0	107	56	3	13	25	1.53
43822--43855	17	2.0	17	88	0	50	73	8	11	5	1.24
47488--47527	18	2.2	18	86	13	55	27	20	5	47	1.70
56109--56148	21	1.9	21	89	0	62	15	37	20	27	1.92
57279--57377	44	2.2	45	96	1	182	24	24	26	25	2.00
58704--58806	51	2.0	51	82	0	125	21	24	13	40	1.89

Tables:   1

The End!