Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017650.1 Corchorus olitorius cultivar O-4 contig17683, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54895

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1073--1114
21
2.0
22
85
4
59
54
2
2
40
1.26
5041--5077
2
18.5
2
88
0
56
51
0
5
43
1.24
5045--5077
14
2.4
14
100
0
66
51
0
6
42
1.26
7378--7414
17
2.2
17
90
0
56
43
2
2
51
1.30
8709--9064
104
3.4
104
92
3
592
40
9
9
40
1.70
9645--9703
28
2.1
28
90
0
91
25
15
3
55
1.55
29282--29310
2
14.5
2
100
0
58
48
0
0
51
1.00
31359--31403
7
6.4
7
87
12
58
57
2
0
40
1.11
31359--31402
22
2.0
22
86
8
63
56
2
0
40
1.11
31363--31403
20
2.0
20
86
9
57
58
2
0
39
1.11
32986--33221
129
1.8
129
97
0
445
45
12
13
27
1.80
33514--33685
85
2.0
85
95
0
308
40
11
20
27
1.86
34385--34418
3
11.3
3
93
0
50
58
0
0
41
0.98
35661--35686
13
2.0
13
100
0
52
30
46
0
23
1.53
38135--38164
2
15.5
2
93
6
53
50
0
0
50
1.00
40539--40736
99
2.0
99
97
0
378
18
4
26
51
1.63
40690--41143
228
2.0
225
95
2
820
29
14
19
36
1.92
42715--42795
39
2.1
39
88
0
117
38
7
18
35
1.79
43004--43028
10
2.5
10
100
0
50
12
60
28
0
1.32
43835--43908
23
3.2
23
67
7
60
47
0
13
39
1.43
43813--43907
46
2.0
48
89
6
149
47
0
12
40
1.42
52758--52835
29
2.7
29
83
2
93
17
21
15
44
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54351--54599
131
1.9
129
86
3
356
36
10
3
49
1.54
54534--54566
15
2.3
15
89
5
50
24
12
0
63
1.28

Tables:   1

The End!