Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017651.1 Corchorus olitorius cultivar O-4 contig17684, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84416

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
259--298
15
2.7
15
88
0
53
10
20
30
40
1.85
2518--2958
161
2.7
161
92
2
699
40
9
3
47
1.51
6300--6375
32
2.4
31
78
12
91
18
25
21
35
1.95
6300--6384
31
2.7
31
79
12
86
17
23
21
37
1.94
10423--10459
19
1.9
19
100
0
74
16
18
10
54
1.71
20667--20693
2
13.5
2
100
0
54
51
0
0
48
1.00
28229--28300
23
3.2
23
67
25
55
30
1
9
58
1.39
28804--28883
42
1.9
41
94
2
142
30
7
16
46
1.74
43033--43068
1
36.0
1
88
0
54
0
2
2
94
0.37
50390--50523
67
2.0
67
86
2
189
29
16
21
32
1.95
50580--50694
44
2.6
44
97
1
212
26
18
20
34
1.95
50579--50651
21
3.2
24
61
28
59
26
17
19
36
1.94
51145--51393
110
2.3
110
88
3
360
29
18
20
31
1.96
52315--52447
67
2.0
67
85
2
178
30
15
21
33
1.94
52429--53031
105
5.6
105
84
6
760
27
17
20
34
1.95
52533--53031
222
2.3
223
89
3
800
28
17
20
34
1.95
53408--53501
49
2.0
47
83
10
120
29
22
19
28
1.98
57825--57940
58
2.0
59
86
5
164
32
15
20
31
1.94
57837--58000
58
2.9
55
78
8
172
30
14
21
33
1.93
66365--66725
174
2.1
175
90
1
573
48
20
15
16
1.81
69104--69185
40
2.0
40
97
0
155
48
25
12
13
1.77
75108--75172
31
2.1
31
97
0
121
35
6
9
49
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75242--75346
31
3.5
30
81
7
115
28
23
12
35
1.91
75242--75313
29
2.4
30
90
4
110
29
25
12
33
1.92
75611--75687
29
2.5
31
83
6
95
35
11
20
32
1.89
77469--77505
15
2.3
17
86
9
51
70
13
8
8
1.34

Tables:   1

The End!