Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017652.1 Corchorus olitorius cultivar O-4 contig17685, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98359

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
749--861
55
2.0
56
88
5
167
36
22
0
40
1.60
928--994
21
3.2
21
68
16
66
28
4
14
52
1.62
3245--3356
13
8.3
13
74
17
77
28
0
12
58
1.34
3249--3329
42
1.9
43
92
2
137
30
0
11
58
1.33
3310--3350
16
2.6
15
92
7
64
29
0
12
58
1.34
3268--3355
29
3.1
27
76
9
86
28
0
11
60
1.31
26122--26152
15
2.1
15
93
0
53
51
12
9
25
1.70
31037--31121
10
8.5
10
90
0
125
32
10
17
38
1.84
31037--31120
30
2.8
30
92
0
141
33
10
17
38
1.85
31120--31183
20
3.2
20
77
16
55
39
15
20
25
1.92
31989--32057
30
2.2
32
82
5
88
30
10
2
56
1.47
32750--32818
31
2.3
31
87
2
95
28
17
28
24
1.97
32823--32855
12
2.6
13
95
4
59
36
0
0
63
0.95
35670--35696
2
13.5
2
100
0
54
48
0
0
51
1.00
36460--36495
7
5.1
7
96
0
54
66
13
19
0
1.24
57755--57795
13
3.2
13
89
3
57
80
0
19
0
0.71
60869--61202
132
2.5
132
96
0
607
31
18
20
29
1.96
73653--73706
6
9.7
6
83
16
64
87
11
0
1
0.63
76496--76572
19
3.9
19
76
6
82
32
15
18
33
1.92
76515--76582
21
3.3
21
75
8
86
30
16
17
35
1.92
76496--76593
40
2.5
40
96
3
180
32
14
18
34
1.91
76527--76594
21
3.3
21
75
8
86
33
11
17
36
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76993--77108
57
2.0
57
96
0
214
33
25
1
39
1.66
77175--77241
21
3.2
21
64
16
57
28
5
14
50
1.66
77172--77254
42
2.0
42
97
0
157
30
7
15
46
1.73
80658--80758
29
3.4
29
78
9
98
45
29
10
13
1.78
86110--86177
34
2.0
34
97
0
127
27
14
14
42
1.85
87721--87760
10
4.0
10
93
0
62
50
10
0
40
1.36
87724--87756
14
2.4
14
94
0
57
51
9
0
39
1.34
90339--90372
13
2.5
13
90
9
50
55
2
0
41
1.15
96067--96098
16
2.0
16
93
0
55
43
6
3
46
1.44

Tables:   1

The End!