Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017654.1 Corchorus olitorius cultivar O-4 contig17687, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23424

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1883--1962
5
15.6
5
74
23
69
66
16
1
16
1.32
1872--1951
19
4.3
19
71
15
67
68
15
1
15
1.27
1883--1962
24
3.6
23
76
20
98
66
16
1
16
1.32
1872--1962
44
2.1
42
86
8
121
68
15
1
15
1.28
2519--2578
30
2.0
30
100
0
120
46
16
13
23
1.82
2597--2750
48
3.1
48
85
3
209
32
17
11
38
1.86
2606--2752
50
3.0
50
87
2
217
32
17
12
37
1.87
3360--3747
50
7.8
50
94
0
650
30
28
13
28
1.94
4146--4218
28
2.6
28
87
6
96
19
17
28
34
1.95
8870--8899
2
15.0
2
92
0
51
53
0
0
46
1.00
12265--12289
13
1.9
13
100
0
50
32
12
16
40
1.84
15403--15444
21
2.0
22
90
4
68
23
28
11
35
1.91
17348--17533
71
2.6
71
89
2
293
30
27
23
18
1.98
17419--17460
21
2.0
21
90
0
66
23
38
19
19
1.93
17490--17554
22
3.0
22
95
0
112
23
33
23
20
1.97

Tables:   1

The End!