Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017655.1 Corchorus olitorius cultivar O-4 contig17688, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19736

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
269--308
21
1.9
21
89
0
62
22
37
22
17
1.94
261--451
71
2.7
71
87
1
276
32
27
22
17
1.96
341--382
21
2.0
21
90
0
66
26
40
16
16
1.90
412--454
22
2.0
22
90
0
68
23
32
23
20
1.98
1445--1483
14
2.6
14
88
8
51
69
0
15
15
1.20
1437--1482
22
2.2
20
84
7
56
71
0
15
13
1.14
1875--1912
13
2.8
13
92
4
58
78
10
0
10
0.95
1875--1912
14
2.8
14
88
4
51
78
10
0
10
0.95
1860--1907
21
2.2
22
96
3
89
79
10
0
10
0.95
1891--1930
11
3.8
11
84
15
50
67
15
0
17
1.23
2522--2725
50
4.0
50
85
5
266
33
18
15
32
1.92
3374--3851
69
6.9
69
92
1
715
26
26
15
30
1.96
4230--4416
30
6.2
30
86
4
252
21
13
16
48
1.81
4832--4919
27
3.3
27
93
0
140
19
20
25
35
1.96
7823--7925
41
2.5
41
81
6
102
24
13
13
48
1.78
15576--15654
25
3.4
25
70
20
80
27
11
0
60
1.31
15576--15796
44
4.9
44
90
1
307
27
9
1
61
1.36
15641--15763
19
6.8
18
68
18
76
26
9
0
63
1.31
15695--15794
27
4.0
26
70
21
88
29
9
2
60
1.39
15722--15800
15
5.3
15
71
25
51
29
8
2
59
1.41
15809--15874
24
2.8
24
80
11
82
22
18
1
57
1.48

Tables:   1

The End!