Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017662.1 Corchorus olitorius cultivar O-4 contig17695, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1705
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.33


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--31  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

                                                          
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         32 TGCTTCTTAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:987 original size:111 final size:111

Alignment explanation


    Indices: 793--1006  Score: 410
    Period size: 111  Copynumber: 1.9  Consensus size: 111

        783 AAAGCAACAT

                        *                *                                   
        793 GATAAATAGCCTTGAATTTTCAAATGTAAGAAATCAGAATAGATGCCCACTTTCCACTGTCACTC
          1 GATAAATAGCCTCGAATTTTCAAATGTAACAAATCAGAATAGATGCCCACTTTCCACTGTCACTC

                                                          
        858 CTACTTCAAGTAGAACTATTATCAGGCCATCAAGAGTAACAAATCA
         66 CTACTTCAAGTAGAACTATTATCAGGCCATCAAGAGTAACAAATCA

                                                                             
        904 GATAAATAGCCTCGAATTTTCAAATGTAACAAATCAGAATAGATGCCCACTTTCCACTGTCACTC
          1 GATAAATAGCCTCGAATTTTCAAATGTAACAAATCAGAATAGATGCCCACTTTCCACTGTCACTC

                                                  
        969 CTACTTCAAGTAGAACTATTATCAGGCCATCAAGAGTA
         66 CTACTTCAAGTAGAACTATTATCAGGCCATCAAGAGTA

       1007 GGAAATGGTT


Statistics
Matches: 101,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 111  101  1.00

ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27


Consensus pattern (111 bp):   
GATAAATAGCCTCGAATTTTCAAATGTAACAAATCAGAATAGATGCCCACTTTCCACTGTCACTC
CTACTTCAAGTAGAACTATTATCAGGCCATCAAGAGTAACAAATCA
Done.