Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017664.1 Corchorus olitorius cultivar O-4 contig17697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39765

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10765--10845
22
3.8
21
83
4
99
39
12
9
38
1.76
11693--11828
45
3.0
45
92
0
218
32
15
11
40
1.83
14403--14452
23
2.2
22
82
6
64
42
10
6
42
1.63
14325--14555
22
10.4
22
68
12
96
36
13
9
41
1.76
15346--15435
46
2.0
45
89
6
139
42
4
8
44
1.56
15593--15671
22
3.6
22
77
3
79
40
13
7
37
1.74
15589--15708
43
2.7
43
79
2
123
39
13
10
37
1.78
15697--15773
21
3.6
21
78
8
75
29
16
10
42
1.82
15697--15793
42
2.2
44
83
7
119
28
17
9
44
1.80
15719--15793
21
3.6
20
80
8
80
25
18
10
45
1.82
16592--16619
2
14.0
2
100
0
56
50
0
0
50
1.00
22623--22687
32
2.0
32
88
5
96
16
27
16
38
1.91
22656--22796
55
2.6
55
87
0
210
18
28
19
34
1.95
24014--24827
438
1.9
438
84
3
1093
30
13
14
41
1.84
24839--24891
12
4.4
12
90
0
88
26
1
7
64
1.31
26630--26769
51
2.8
50
88
7
203
22
21
12
44
1.85
26630--26786
51
3.1
51
84
6
160
21
21
12
44
1.85
28045--28070
2
13.0
2
100
0
52
50
0
0
50
1.00
28476--28509
15
2.2
16
89
5
52
55
0
0
44
0.99
29695--29790
21
4.3
21
77
14
102
36
8
27
28
1.85
29695--29790
24
4.3
23
82
7
110
36
8
27
28
1.85
29695--29790
45
2.1
44
85
11
124
36
8
27
28
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29838--29881
15
2.9
15
86
0
70
34
9
29
27
1.87
31127--31178
16
3.0
17
77
11
61
26
5
21
46
1.74
33691--33731
21
2.0
21
90
0
64
21
4
19
53
1.63
35214--35262
22
2.2
22
89
7
73
44
2
2
51
1.24

Tables:   1

The End!