Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017668.1 Corchorus olitorius cultivar O-4 contig17701, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60085

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4165--4220
26
2.2
26
96
3
105
41
3
0
55
1.17
11397--11460
21
3.2
20
84
13
78
35
14
18
31
1.91
15724--15807
31
2.7
31
86
0
105
23
22
20
33
1.97
15736--15876
31
4.5
31
82
7
142
19
21
22
36
1.95
15736--15876
62
2.3
62
83
2
167
19
21
22
36
1.95
16059--16092
16
2.2
15
94
5
59
0
8
0
91
0.43
24694--24770
26
3.0
26
98
0
145
32
15
19
32
1.93
26273--26297
6
4.2
6
100
0
50
36
32
0
32
1.58
26964--26996
3
11.0
3
93
0
57
36
63
0
0
0.95
31547--31664
55
2.1
55
98
0
227
47
11
16
24
1.80
43601--43631
15
2.1
15
100
0
62
38
12
25
22
1.90
44069--44118
22
2.2
23
78
3
57
36
8
2
54
1.42
44274--44346
2
36.5
2
78
5
76
43
5
4
46
1.45
49564--49588
13
1.9
13
100
0
50
48
0
0
52
1.00
50377--50411
18
1.9
18
88
0
52
51
17
8
22
1.72
50539--50593
27
2.0
27
92
0
92
58
7
18
16
1.60
50923--50954
4
8.5
4
86
13
50
0
21
0
78
0.76
50927--50961
18
1.9
18
88
0
52
2
20
2
74
1.08
50922--50971
22
2.2
23
85
7
66
2
22
2
74
1.03
50924--50954
11
2.8
11
95
0
53
0
22
0
77
0.77
58397--58426
15
2.0
15
100
0
60
33
0
0
66
0.92
58901--58973
28
2.6
29
91
4
121
20
13
21
43
1.86

Tables:   1

The End!