Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017670.1 Corchorus olitorius cultivar O-4 contig17703, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41613

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1075--1119
14
3.5
12
84
9
54
31
0
11
57
1.33
3271--3425
21
7.4
21
94
1
242
25
25
19
30
1.98
6101--6134
17
2.0
17
88
0
50
41
17
0
41
1.50
9611--9652
19
2.2
19
100
0
84
23
23
9
42
1.83
11175--11213
2
19.5
2
94
0
69
46
2
0
51
1.14
12702--12737
18
2.0
18
94
0
63
33
16
19
30
1.94
13601--13644
20
2.2
20
100
0
88
27
0
22
50
1.50
14274--14526
108
2.5
100
83
11
306
41
9
9
39
1.69
16597--16654
27
2.1
27
83
0
71
29
34
3
32
1.74
18227--18260
9
3.6
9
85
14
50
47
2
0
50
1.16
26042--26086
23
2.0
23
86
8
65
48
20
6
24
1.73
27644--27668
2
12.5
2
100
0
50
52
0
0
48
1.00
28850--28891
22
2.1
19
86
13
57
16
33
14
35
1.89
39794--39829
13
2.7
13
86
4
54
44
16
5
33
1.71
41016--41049
2
17.0
2
93
0
59
50
0
2
47
1.16
41247--41284
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!