Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017671.1 Corchorus olitorius cultivar O-4 contig17704, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31329

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3032--3058
6
4.5
6
100
0
54
0
66
14
18
1.25
3207--3269
25
2.7
22
73
17
65
46
28
4
20
1.71
4801--4912
57
2.0
57
84
3
147
36
20
1
41
1.63
6771--7022
124
2.0
126
93
1
436
24
19
19
37
1.94
16182--16260
40
2.0
39
97
2
149
45
12
5
36
1.64
18862--18896
10
3.5
10
92
0
61
31
5
20
42
1.75
18861--18906
20
2.3
20
82
17
60
34
6
19
39
1.78
18890--18947
20
3.1
19
73
22
59
36
17
22
24
1.95
26399--26443
22
2.0
22
100
0
90
46
22
13
17
1.83
29462--29513
6
8.7
6
84
0
59
34
0
53
11
1.37
31152--31270
58
2.1
58
88
0
175
24
15
21
37
1.93

Tables:   1

The End!