Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017672.1 Corchorus olitorius cultivar O-4 contig17705, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21905

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29--63
2
18.0
2
94
5
63
48
0
0
51
1.00
2690--3027
176
2.0
170
86
7
463
37
10
9
42
1.72
3041--3079
20
2.0
20
85
10
53
30
5
0
64
1.15
3246--3438
22
8.7
21
77
11
163
36
9
17
37
1.82
3242--3443
66
3.0
65
85
7
246
35
8
18
37
1.82
3524--3639
22
5.4
21
76
13
69
36
7
18
37
1.79
3565--3621
22
2.7
21
91
5
96
31
7
17
43
1.76
3726--3806
22
3.8
21
80
4
83
39
9
13
37
1.78
5823--5865
22
2.0
22
85
0
59
46
6
13
32
1.71
5825--5876
22
2.4
22
78
9
54
46
5
11
36
1.64
5977--6411
22
19.5
22
72
8
236
39
9
15
35
1.81
6380--6422
21
2.0
22
86
9
61
55
4
11
27
1.55
13971--14032
20
2.8
24
68
27
62
45
3
9
41
1.53
13987--14027
20
2.0
20
90
0
64
48
4
4
41
1.46
15187--15353
22
7.6
22
72
7
81
40
12
10
37
1.77
15410--15466
21
2.7
21
83
8
62
38
22
3
35
1.72
15478--15583
44
2.4
44
80
1
113
36
17
8
36
1.81
15826--15954
60
2.2
60
80
8
147
30
14
20
34
1.92
16009--16172
63
2.6
62
77
10
165
30
17
17
35
1.92
18319--18348
8
3.8
8
95
0
51
46
0
23
30
1.52
20318--20353
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!