Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017673.1 Corchorus olitorius cultivar O-4 contig17706, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55935

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52--136
42
2.0
42
90
0
134
36
3
17
42
1.67
699--752
16
3.4
16
76
0
54
11
12
37
38
1.79
681--760
32
2.5
32
81
4
99
11
18
35
35
1.87
748--777
15
1.9
16
93
6
53
0
23
56
20
1.42
2011--2086
40
1.9
40
94
0
134
56
5
9
28
1.52
7188--7227
15
2.6
16
84
8
55
60
12
10
17
1.59
8592--8651
29
2.0
30
87
6
86
38
18
8
35
1.81
15079--15128
21
2.4
21
93
6
84
26
26
20
28
1.99
20602--20648
26
1.9
24
87
12
69
40
4
27
27
1.75
21518--21609
21
4.4
21
97
2
168
25
25
21
28
1.99
27430--27533
52
2.0
53
94
1
183
23
25
24
27
2.00
27484--27527
22
2.0
22
86
0
61
27
22
25
25
2.00
27559--27599
21
2.0
21
90
0
64
26
21
29
21
1.99
31778--31822
11
4.2
10
83
11
54
40
0
17
42
1.50
31781--31828
22
2.2
22
85
7
62
43
2
16
37
1.60
38178--38231
22
2.3
23
84
6
65
37
1
20
40
1.63
40027--40059
11
2.8
12
81
9
50
36
9
18
36
1.82
40028--40088
29
2.0
30
87
6
88
39
8
18
34
1.80
41435--41474
15
2.6
16
88
4
55
15
10
12
62
1.54
41811--41888
30
2.7
28
74
4
75
32
3
16
47
1.65
41900--41959
28
2.1
28
84
6
77
50
6
11
31
1.65
46987--47039
25
2.1
25
89
6
81
37
22
7
32
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48269--48328
29
2.0
30
87
6
86
38
8
18
35
1.81
49702--49741
15
2.6
16
84
8
55
17
10
12
60
1.59
49973--50003
15
2.1
15
93
0
53
45
12
6
35
1.68

Tables:   1

The End!